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Issue: Vol. 4407 No. 2: 10 Apr. 2018
Type: Article
Published: 2018-04-10
DOI: 10.11646/zootaxa.4407.2.1
Page range: 151–190
Abstract views: 95
PDF downloaded: 2

Taxonomic changes and description of two new species for the Phyllodactylus lanei complex (Gekkota: Phyllodactylidae) in Mexico

Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México. Circuito de posgrados, Ciudad Universitaria, Coyoacán, 04510 Ciudad de México, México. Museo de Zoología, Facultad de Ciencias, Universidad Nacional Autónoma de México. Apartado postal 70–399, 04510 Ciudad de México, México.
Museo de Zoología, Facultad de Ciencias, Universidad Nacional Autónoma de México. Apartado postal 70–399, 04510 Ciudad de México, México.
Reptilia molecular phylogenetics endemic geckos diversity species validation morphology bioclimatic profiles integrative taxonomy species tree

Abstract

An integrative taxonomy approach was implemented based on analysis of genetic, phylogenetic, morphological and ecological data to identify the cryptic diversity within the Phyllodactylus lanei complex. At least six species can be identified, of which four are currently considered subspecies: Phyllodactylus lanei, Phyllodactylus rupinus, Phyllodactylus isabelae, Phyllodactylus lupitae and two corresponding to undescribed taxa, which are identified and described in this contribution. These differ from other Mexican geckos in several characters: genetic distance (DNAmt), position in molecular phylogeny (concatened data DNAmt+DNAnu), species tree, morphological characters such as snout-vent length, longitudinal scales, tubercles from head to tail, interorbital scales, scales across venter, third labial–snout scales and rows of tubercles across dorsum; there are also differences in their bioclimatic profiles (temperature and precipitation) and geographical distribution. The most recent studies on taxonomy and evolution of Mexican geckos (Phyllodactylus) show that the diversity of this group of reptiles is currently underestimated, suggesting that more research and conservation efforts are should be addressed at these lizards.

 

References

  1. Bañuelos-Alamillo, J.A., Trujillo-de la Torre, I.Y., Quintero-Díaz, G.E. & Carbajal-Márquez, R.A. (2017) The Lane´s Leaf-toed Gecko, Phyllodactylus lanei Smith, 1935: a new state record for Zacatecas, Mexico. Herpetology Notes, 10, 669–671.

    Blair, C., Méndez-de La Cruz, F.R., Ngo, A., Lindell, J., Lathrop, A. & Murphy, R.W. (2009) Molecular phylogenetics and taxonomy of leaf-toed geckos (Phyllodactylidae: Phyllodactylus) inhabiting the peninsula of Baja California. Zootaxa, 2027, 28–42.

    Blair, C., Jiménez-Arcos, V.H., Méndez-de la Cruz, F.R. & Murphy, R.W. (2013) Landscape genetics of leaf-toed geckos in the tropical dry forest of Northern Mexico. PLoS ONE, 8, 1–15.
    https://doi.org/10.1371/journal.pone.0057433

    Blair, C., Jiménez-Arcos, V.H., Méndez-de la Cruz, F.R. & Murphy, R.W. (2014) Historical and contemporary demography of leaf-toed geckos (Phyllodactylidae: Phyllodactylus tuberculosus saxatilis) in the Mexican dry forest. Conservation Genetics, 1–11. [published online]
    https://doi.org/10.1007/s10592-014-0668-y

    Blair, C., Méndez-de la Cruz, F.R., Law, C. & Murphy, R. (2015) Molecular phylogenetics and species delimitation of leaf-toed geckos (Phyllodactylidae: Phyllodactylus) throughout the Mexican tropical dry forest. Molecular Phylogenetics and Evolution, 84, 254–265.
    https://doi.org/10.1016/j.ympev.2015.01.003

    Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C-H., Xie, D., Suchard, M.A., Rambaut, A. & Drummond, A.J. (2014) BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 10, 1–6.
    https://doi.org/10.1371/journal.pcbi.1003537

    Carranza, S. (2002) Los métodos moleculares en el estudio de la sistemática y filogenia de los Anfibios y Reptiles ibéricos. In: Pleguezuelos, J.M., Márquez, R. & Lizana, M. (Eds.), Atlas y Libro Rojo de los Anfibios y Reptiles de España. Ministerio de Medio Ambiente Asociación Herpetológica Española (2ª impresión), Madrid, pp. 549–579.

    Carranza, S., Harris, D.J., Arnold, E.N., Batista V. & Gonzalez de la Vega, J.P. (2006) Phylogeography of the lacertid lizard, Psammodromus algirus, in Iberia and across the Strait of Gibraltar. Journal of Biogeography, 33, 1279–1288.
    https://doi.org/10.1111/j.1365-2699.2006.01491.x

    Castiglia, R, Aguayo, A.G., Bezerra, A.M.R., Flores-Villela, O. & Gournung, E. (2009) Karyotypic diversification due to Robertsonian rearrangements in Phyllodactylus lanei Smith, 1935 (Squamata, Gekkonidae) from Mexico. Atti della Accademia Nazionale dei Lincei, Rendiconti Lincei, Scienze Fisiche e Naturali, 20, 77–82.
    https://doi.org/10.1007/s12210-009-0005-4

    Castiglia, R., Annesi, F., Bezerra, A.M.R., García, A. & Flores-Villela, O. (2010) Cytotaxonomy and DNA taxonomy of lizards (Squamata, Sauria) from a tropical dry forest in the Chamela-Cuixmala Biosphere Reserve on the coast of Jalisco, Mexico. Zootaxa, 2508, 1–29.

    Castro-Franco, R. & Uribe-Peña, Z. (1992) Dos subespecies nuevas de Phyllodactylus lanei (Sauria: Gekkonidae). Anales del Instituto de Biología. Universidad Nacional Autónoma de México, Serie Zoología, 63, 113–123.

    Ceballos, G., Szekely, A., García, A., Rodríguez, P. & Noguera, F. (1999) Programa de Manejo de la Reserva de la Biosfera Chamela-Cuixmala. Instituto Nacional de Ecología, SEMARNAP, México, D.F., 133 pp.

    CONABIO (2016) Sistema de información sobre especies invasoras en México. Comisión Nacional para el Conocimiento y Uso de la Biodiversidad. Available from: http://www.biodiversidad.gob.mx/invasoras (accessed 13 March 2018)

    Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature methods, 9, 772–772.
    https://doi.org/10.1038/nmeth.2109

    Devitt, T.J., LaDuc, T.J. & McGuire, J.A. (2008) The Trimorphodon biscutatus (Squamata: Colubridae) Species Complex Revisited: A Multivariate Statistical Analysis of Geographic Variation. Copeia, 370–387.
    https://doi.org/10.1643/CH-07-045

    Dixon, J.R. (1964) The systematics and distribution of lizards of the genus Phyllodactylus in North and Central America. New Mexico State University Research Center, Scientific Bulletin, 1964, 1–139.

    Flores-Villela, O. (1993) Herpetofauna of Mexico: Distribution and Endemism. In: Ramamoorthy, T.P., Bye, R., Lot A. & Fa, J. (Eds.), Biological diversity of Mexico: origins and distributions. Oxford Univ. Press. New York, pp. 253–280.

    García, A. & Ceballos, G. (1994) Guía de campo de los reptiles y anfibios de la costa de Jalisco, México. Fundación Ecológica de Cuixmala, A.C., Instituto de Biología, Universidad Nacional Autónoma de México. México, D.F., 176 pp.

    Global Invasive Species Database (GISD) (2015) Species profile Hemidactylus frenatus. Available from: http://www.iucngisd.org/gisd/species.php?sc=1344 (accessed 31 December 2017)

    Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.

    Hammer, Ø., Harper, D. & Ryan, P. (2001) PAST: PAleontological STatistical software package for education and data analysis. V3.13. Palaentological Electronica, 4, 1–4.

    Heled, J. & Drummond, A.J. (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570–580.
    https://doi.org/10.1093/molbev/msp274

    Librado, P. & Rozas, J. (2009) DnaSP v5: a software for comphensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451–1452.
    https://doi.org/10.1093/bioinformatics/btp187

    LaDuc, T.J. & Johnson, J.D. (2003) A taxonomic revisión of Trimorphodon biscutatus vilkinsonii (Serpentes: Colubridae). Herpetologica, 59, 365–375.
    https://doi.org/10.1655/01-84

    Maddison, W.P. (1997) Gene trees in species trees. Systematic Biology, 46, 523–536.
    https://doi.org/10.1093/sysbio/46.3.523

    Maddison, W.P. & Maddison, D.R. (2015) Mesquite: a modular system for evolutionary analysis. Version 3.04. Available from: http://mesquiteproject.org (accessed 13 March 2018)

    McCormack, J.E., Hird, S.M., Zellmer, A.J., Carstens, B.C. & Brumfield, R.T. (2013) Applications of next-generation sequencing to phylogeography and phylogenetics. Molecular Phylogenetics and Evolution, 66, 526–538.
    https://doi.org/10.1016/j.ympev.2011.12.007

    Mulcahy, D.G. (2008) Phylogeography and species boundaries of the western North American Nightsnake (Hypsiglena torquata): Revisiting the subspecies concept. Molecular Phylogenetics and Evolution, 46, 1095–1115.
    https://doi.org/10.1016/j.ympev.2007.12.012

    Murphy, R.W., Blair, C. & Méndez-de la Cruz, F.R. (2009) A new species of leaf-toed gecko, genus Phyllodactylus (Squamata: Gekkota: Phyllodactylidae) from Guerrero, Mexico. South American Journal of Herpetology, 4 (1), 17–24.
    https://doi.org/10.2994/057.004.0103

    Pineda-García, F., Arredondo-Amezcua, L. & Ibarra-Manriquez, G. (2007) Riqueza y diversidad de especies leñosas del bosque tropical caducifolio El Tarimo, Cuenca del Balsas, Guerrero. Revista Mexicana de Biodiversidad, 78, 129–139.

    Ponce-Campos, P. & García-Aguayo, A. (2007) Phyllodactylus lanei. The IUCN Red List of Threatened Species. Version 2014.2. Available from: http://www.iucnredlist.org (accessed 27 October 2014)

    Potter, S., Bragg, J.G., Peter, B.M., Bi, K. & Moritz, C. (2016) Phylogenomics at the tips: inferring lineages and their demographic history in a tropical lizard, Carlia amax. Molecular Ecology, 25, 1367–1380.
    https://doi.org/10.1111/mec.13546

    Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v1.6. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 30 May 2016)

    Ramírez-Reyes, T., Melo-León, C. & Pérez-Ramos, E. (2015) Nuevos registros de herpetofauna para la isla El Coral, Nayarit, México. Revista Mexicana de Biodiversidad, 86, 541–545.
    https://doi.org/10.1016/j.rmb.2015.04.017

    Ramírez-Reyes, T., Piñero, D., Flores-Villela, O. & Vázquez-Domínguez, E. (2017) Molecular systematics, species delimitation and diversification patterns of the Phyllodactylus lanei complex (Gekkota: Phyllodactylidae) in Mexico. Molecular Phylogenetics and Evolution, 115, 82–94.
    https://doi.org/10.1016/j.ympev.2017.07.008

    Ramírez-Sandoval, E., Ramírez-Bautista, A. & Vitt, J.L. (2006) Reproduction in the lizard Phyllodactylus lanei (Squamata: Gekkonidae) from the Pacific Coast of Mexico. Copeia, 1, 1–9.
    https://doi.org/10.1643/0045-8511(2006)006[0001:RITLPL]2.0.CO;2

    Rannala, B. & Yang, Z. (2013) Improved reversible jump algorithms for Bayesian species delimitation. Genetics, 194, 245–253.
    https://doi.org/10.1534/genetics.112.149039

    Reyna-Álvarez, J., Suazo-Ortuño, I. & Alvarado-Díaz, J. (2010) Herpetofauna del Municipio de Huetamo, Michoacán, México. Biológicas, 12 (1), 40−45.

    Ronquist, F., Teslenko, M., Van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539−542.
    https://doi.org/10.1093/sysbio/sys029

    Silvestro, D. & Michalak, I. (2012) RaxmlGUI: A graphical front-end for RAxML. Organisms Diversity & Evolution, 12, 335–337.
    https://doi.org/10.1007/s13127-011-0056-0

    Šmid, J., Carranza, S., Kratochvil, L., Gvozdik, V., Karim-Nasher, A. & Moravec, J. (2013a) Out of Arabia: A complex biogeographic history of multiple vicariance and dispersal events in the gecko genus Hemidactylus (Reptilia: Gekkonidae). PloS ONE, 8, e64018.
    https://doi.org/10.1371/journal.pone.0064018

    Šmíd, J., Moravec, J., Kratochvíl, L., Gvoždík, V., Nasher, A.K., Busais, S.M., Wilms, T., Shobrak, M.Y. & Carranza, S. (2013b) Two newly recognized species of Hemidactylus (Squamata, Gekkonidae) from the Arabian Peninsula and Sinai, Egypt. ZooKeys, 355, 79–107.
    https://doi.org/10.3897/zookeys.355.6190

    Smith, H.M. (1935) Miscellaneous notes on Mexican lizards. The University of Kansas Science Bulletin, 36, 119–155.

    Stephens, M., Smith, N.J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. The American Journal of Human Genetics, 68, 978–989.
    https://doi.org/10.1086/319501

    Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30, 2725–2729.
    https://doi.org/10.1093/molbev/mst197

    Toledo, A. (2003) Ríos, costas, mares. Hacia un análisis integrado de las regiones hidrológicas de México. INE-Semarnat, México, 117 pp.

    Tonini, J., Moore, A., Stern, D., Shcheglovitova, M. & Ortí, G. (2015) Concatenation and species tree methods exhibit statistically indistinguishable accuracy under a range of simulated conditions. PLOS Currents Tree of Life, 1–14. [published online]
    https://doi.org/10.1371/currents.tol.34260cc27551a527b124ec5f6334b6be

    Unmack, P.J., Bagley, J.C., Adams, M., Hammer, M.P. & Johnson, J.B. (2012) Molecular Phylogeny and Phylogeography of the Australian Freshwater Fish Genus Galaxiella, with an Emphasis on Dwarf Galaxias (G. pusilla). PLoS ONE, 7, e38433.
    https://doi.org/10.1371/journal.pone.0038433

    Uetz, P. & Hošek, J. (2016) The Reptile Database. Available from: http://www.reptile-database.org/ (accessed 30 July 2016)

    Vitt, L.J. & Caldwell, J.P. (2014) Herpetology: An Introductory Biology of Amphibians and Reptiles. 4th Edition. Academic Press, San Diego, 757 pp.
    https://doi.org/10.1016/B978-0-12-386919-7.00002-2

    Woolrich-Piña, G.A., Ponce-Campos, P.J., Loc-Barragán, J., Ramírez-Silva, P., Mata-Silva, V., Johnson, J.D., García-Padilla, E. & Wilson, L.D. (2016) The herpetofauna of Nayarit, Mexico: composition, distribution, and conservation. Mesoamerican Herpetology, 3, 376–448.

    Yang, Z. (2015) The BPP program for species tree estimation and species delimitation. Current Zoology, 61 (5), 854–865.
    https://doi.org/10.1093/czoolo/61.5.854

    Yang, Z. & Rannala, B. (2010) Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Science, 107, 9264–9269.
    https://doi.org/10.1073/pnas.0913022107