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Article
Published: 2022-01-10

Neodeightonia arengae sp. nov., Botryosphaeriaceous taxa on Arenga tremula (Arecaceae) from Guangdong, China

Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, P.R. China; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, P.R. China
Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, P.R. China; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, P.R. China; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, P.R. China
1 new species Botryosphaeriaceae multi-gene palm fungi saprobic Fungi

Abstract

Microfungi associated with palm are a significant fungal group with a unique ecological niche and a broad distribution in tropical regions. Even though many fungal species have been reported from palm hosts, studies on fungi from Arenga tremula are considerably few. In this study, we isolated a saprobic Botryosphaeriaceae species on A. tremula, collected from Guangzhou, Guangdong Province, China. Morphological characteristics and phylogenetic analysis of the internal transcribed spacer (ITS), small subunit nuclear rRNA gene (SSU),part of the large subunit nuclear rRNA gene (LSU) and translation elongation factor 1−alpha gene (tef 1-α). Based on phylogenetic results and morphology we introduced Neodeightonia arengae sp. nov., with species description and illustrations. In addition, we provide a comparison of morphological characters of currently accepted Neodeightonia species. This is the first report of a Neodeightonia species associated with Arenga tremula and so represents an additional contribution to the knowledge of fungi associated with palm trees.

References

  1. Adamčík, S., Cai, L., Chakraborty, D., Chen, X.H., Cotter, H.V.T., Dai, D.Q., Dai, Y.C., Das, K., Deng, C.Y., Masoomeh, G.N., Hyde, K.D., Langer, E., Latha, K.P.D., Liu, F., Liu, S.L., Liu, T.T., Wei, L.V., Shu-Xia, LV, Machado, A.R., Pinho, D.B., Pereira, O.L., Prasher, I.B., Rosado, A.W.C., Qin, J., Qin, W.M., Verma, R.K., Wang, Q., Yang, Z.L., Yu, X.D., Zhou, L.W., Buyck, B. (2015) Fungal Biodiversity Profiles 1–10. Cryptogamie, Mycologie 36 (2): 121–166.  https://doi.org/10.7872/crym/v36.iss2.2015.121

  2. Arx, J.A.V. & Müller, E. (1975) A re-evaluation of the bitunicate Ascomycetes with keys to families and genera. Studies in Mycology 9: 1–159. [Baarn]

  3. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium Series 41: 95–98.

  4. Cai, W.Q., Wang, Z., Deng, J.Y. (2007) Occurrence status and control strategies of dangerous palm plant diseases and insect pests in Guangdong Province. Hunan Forestry Science and Technology 2007 (03): 48–50. [https://kns.cnki.net/kcms/detail/detail.aspx?FileName=HLKJ200703016&DbName=CJFQ2007]

  5. Carbone, I. & Kohn, L. (1999) A method for Designing Primer Sets for Speciation Studies in Filamentous Ascomycetes. Mycologia 91 (3): 553–556. https://doi.org/10.2307/3761358

  6. Chethana, K.W.T., Manawasinghe, I.S., Hurdeal, V.G., Bhunjun, C.S., Appadoo, M.A., Gentekaki, E., Raspé, O., Promputtha, I. & Hyde, K.D. (2021) What are fungal species and how to delineate them?. Fungal Diversity 109: 1–25.  https://doi.org/10.1007/s13225-021-00483-9

  7. Christenhusz, M.J.M. & Byng, J.W. (2016) The number of known plants species in the world and its annual increase. Phytotaxa 261 (3): 201–207. http://dx.doi.org/10.11646/phytotaxa.261.3.1

  8. Dai, D.Q., Phookamsak, R., Wijayawardene, N.N., Li, W.J., Bhat, D.J., Xu, J.C., Taylor, J.E., Hyde, K.D. & Chukeatirote, E. (2016) Bambusicolous fungi. Fungal Diversity 82 (1): 1–105.  https://doi.org/10.1007/s13225-016-0367-8

  9. Fröhlich, J., Taylor, J.E. & Hyde, K.D. (2000) Palm microfungi. Fungal Diversity Press.

  10. Gao, W., Tu, R.X., Li, H., Fang, Y.L. & Que, Q.M. (2020) In the Subtropical Monsoon Climate High-Density City, What Features of the Neighborhood Environment Matter Most for Public Health? International Journal of Environmental Research and Public Health 17: 9566. https://doi.org/10.3390/ijerph17249566

  11. Garcia, J.F., Lawrence, D.P., Morales-Cruz, A., Travadon, R., Minio, A., Hernandez-Martinez, R., Rolshausen, P.E., Baumgartner, K. & Cantu, D. (2021) Phylogenomics of Plant-Associated Botryosphaeriaceae Species. Frontiers in microbiology 12: 652802. https://doi.org/10.3389/fmicb.2021.652802

  12. Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D., Mckenzie, E., Sarma, V., Lücking, R., Boonmee, S., Bhat, D.J., Liu, N.G., Tennakoon, D., Pem, D., Karunarathna, A., Jiang, S.H., Jones, G., Phillips, A., Manawasinghe, I., Tibpromma, S., Jayasiri, S., Sandamali, D., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.Z., Phukhamsakda, C., Dissanayake, A.J., Zeng, X.Y., Luo, Z.L., Tian, Q., Thambugala, K.M., Dai, D.Q., Samarakoon, M.C., Chethana, K.W.T., Ertz, D., Doilom, M., Liu, J.K., Pérez Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Niranjan, M., Zhang, S.N., Ariyawansa, H.A., Jiang, H.B., Zhang, J.F., Norphanphoun, C., Silva, N.I.D., Thiyagaraja, V., Zhang, H., Bezerra, J.D.P., Miranda González, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Sérusiaux, E., Abeywickrama, P.D., Bao, D.F., Devadatha, B., Wu, H.X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Bhunjun, C.S., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Xu, J.C., Zheng, J.S., Liu, G., Feng, Y. & Xie, N. (2020) Refined families of Dothideomycetes: orders and families incertae sedis in Dothideomycetes. Fungal Diversity 104: 1–302. https ://doi.org/10.1007/s1322 5-020-00462-6

  13. Hyde, K.D. (1994) Fungal from Palms. XIII. The genus Oxydothis, a revision. Sydowia 46: 265–314.

  14. Hyde, K.D. & Cannon, P.F. (1999) Fungal Causing Tar Spots on Palms. Mycological Papers 175: 1–114.

  15. Hyde, K.D., Taylor, J.E. & Fröhlich, J. (2000) Genera of Ascomycetes from Palms. Fungal Diversity Press.

  16. Huelsenbeck, J.P., Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.  https://doi.org/10.1093/bioinformatics/17.8.754.

  17. Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., AbdElsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsaard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., GhobadNejhad, M., Nilsson, H., Pang, K.L., Pereira, O.L., Phillips, A.J.L., Raspé, O., Rollins, A.W., Romero, A.I, Etayo, J., Selçuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., AbdelWahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawardene, N.N., Zhao, R.L., Zhao, Q., Kang, J.C., Promputtha, I. (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. http://dx.doi.org/10.1007/s13225-015-0351-8

  18. Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z., Kang, J.C., Xu, J., Karunarathna, S.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10 (1): 1–186.  https://doi.org/10.5943/mycosphere/10/1/1

  19. Konta, S., Hongsanan, S., Phillips, A.J.L., Jones, E.B.G., Boonmee, S., Hyde, K.D. (2016) Botryosphaeriaceae from palms in Thailand II - two new species of Neodeightonia, N. rattanica and N. rattanicola from Calamus (rattan palm). Mycosphere 7 (7): 90–961.  https://doi.org/10.5943/mycosphere/si/1b/6

  20. Ligoxigakis, E.K., Markakis, E.A., Papaioannou, I.A., Typas, M.A. (2013) First Report of Palm Rot of Phoenix spp. Caused by Neodeightonia phoenicum in Greece. Plant Disease 97 (2): 286.  https://www.researchgate.net/publication/263040162

  21. Liu, J.K., Chomnunti, P., Cai, L., Phookamsak, R., Chukeatirote, E., Jones, E.B.G., Moslem, M., Hyde, K.D. (2010) Phylogeny and morphology of Neodeightonia palmicola sp. nov. from palms. Sydowia 62: 261–276. [https://www.researchgate.net/publication/249968435]

  22. Liu, J.K., Phookamsak, R., Doilom, M., Wikee, S., Li, Y.M., Ariyawansha, H., Boonmee, S., Chomnunti, P., Dai, D.Q., Bhat, J.D., Romero, A.I., Zhuang, W.Y., Monkai, J., Gareth, J.E.B., Chukeatirote, E., Thida, W.K.K, Zhao, Y.C., Wang, Y. & Hyde, K.D. (2012) Towards a natural classification of Botryosphaeriales. Fungal Diversity 57 (1): 149–210. https://doi.org/10.1007/s13225-012-0207-4

  23. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees. In: Gateway Computing Environments Workshop (GCE).  pp. 1–8.  https://doi.org/10.1109/GCE.2010.5676129

  24. NSII (2017) The NSII Specimen search, version 2020, Beijing China. Available from: http://www.nsii.org.cn/2017/query.php?name=u5e7fu4e1c (accessed 23 May 2021).

  25. Pem, D., Jeewon, R., Chethana, K.W.T. Hongsanan, S., Doilom, M., Suwannarach, N. & Hyde, K.D. (2021) Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. Fungal Diversity 109: 283–319.  https://doi.org/10.1007/s13225-021-00485-7

  26. Phillips, A.J.L., Alves, A., Pennycook, S.R., Johnston, P.R., Ramaley, A., Akulov, A. & Crous, P.W. (2008) Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21: 29–55. https://doi.org/10.3767/003158508X340742

  27. Phillips, A.J.L., Alves, A., Abdollahzadeh, J., Slippers, B., Wingfield, M.J., Groenewald, J.Z. & Crous, P.W. (2013) The Botryosphaeriaceae: genera and species known from culture. Studies in Mycology 76 (1): 51–167. https://doi.org/10.3114/sim0021

  28. Pinruan, U., Rungjindamai, N., Sakayaroj, J., Lumyong, S., Hyde, K.D. & Jones, E.B.G. (2010) Baipadisphaeria gen. nov., a freshwater ascomycete Hypocreales, Sordariomycetes from decaying palm leaves in Thailand. Mycosphere 1 (1). [https://www.cabdirect.org/cabdirect/abstract/20198647685]

  29. Punithalingam, E. (1969) Studies on Sphaeropsidales in culture. Commonwealth Mycological Institute.

  30. Rayner RW. (1970) A Mycological Colour Chart. Kew, UK: Commonwealth Mycological Institute & British Mycological Society.

  31. Sayan, M.S. (2001) Landscaping with Palms in the Mediterranean. Palms 45 (4): 171–176

  32. Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J., Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20

  33. Slippers, B. & Wingfield, M.J. (2007) Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biology Reviews 21 (2–3): 90–106. https://doi.org/10.1016/j.fbr.2007.06.002

  34. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57 (5): 758–771. https://doi.org/10.1080/10635150802429642

  35. Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (9): 1312–1313.  https://doi.org/10.1093/bioinformatics/btu033

  36. Swofford, D.L. (2003) PAUP: phylogenetic analysis using parsimony, Version 4.0 b10. Laboratory of Molecular Systematics Smithsonian Institution. Available from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3348772 (accessed 1 September 2016)

  37. Taylor, J.E. & Hyde, K.D. (2003) Microfungi of Tropical and Temperate Palms. Fungal Diversity Press 108 (2): 223–223.  https://doi.org/10.1017/S0953756204249668

  38. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990

  39. White, T.J., Bruns, T., Lee, S.  & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications. Academic Press, Inc., pp. 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1

  40. Wu, N., Dissanayake, A.J., Manawasinghe, I.S., Rathnayaka, A.R., Liu, J.K., Phillips, A.J.L., Promputtha, I. & Hyde, K.D. (2021) https://botryosphaeriales.org/, an online platform for up-to-date classification and account of taxa of Botryosphaeriales. Database article ID baab061. https://doi.org/10.1093/database/baab06

  41. Zhang, W., Groenewald, J.Z., Lombard, L., Schumacher, R.K., Phillips, A.J.L. & Crous, P.W. (2021) Evaluating species in Botryosphaeriales. Persoonia 46: 63–115.  https://doi.org/10.3767/persoonia.2021.46.03