Skip to main content Skip to main navigation menu Skip to site footer
Article
Published: 2022-09-14

Hyphocapnodia sichuanensis gen. et sp. nov. (Capnodiaceae), a novel hyphomycete from Sichuan Province, China

Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China
Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, P.R. China
Departamento de Tecnología Médica, Facultad de Ciencias de la Salud, Universidad de Tarapacá, Sede Iquique, Av. Luis Emilio Recabarren 2477, Iquique, Chile
Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China
2 new taxa anamorph Dothideomycetes phylogeny sooty moulds Fungi

Abstract

A hyphomycetous sooty mould was collected on a dead bamboo (Bambusoideae, Gramineae) from a terrestrial habitat in Sichuan Province, China. To establish the phylogenetic position of newly collected sooty mould within the Capnodiales, we sequenced two rDNA regions, ITS1-5.8S-ITS2 (ITS) and 28S, and two protein-coding genes tef1-α and rpb2. Based on maximum likelihood and Bayesian analyses of a combined dataset and an examination of morphology, we describe and illustrate Hyphocapnodia gen. et sp. nov. Hyphocapnodia sichuanensis is characterized by subcylindrical, dark brown to black synnemata with monoblastic conidiogenous cells producing subcylindrical to fusiform, transversely septate, brown conidia with a truncate base.

References

  1. Abdollahzadeh, J., Groenewald, J.Z., Coetzee, M.P., Wingfield, M.J. & Crous, P.W. (2020) Evolution of lifestyles in Capnodiales. Studies in Mycology 95: 381–414. http://doi.org/10.1016/j.simyco.2020.02.004

  2. Andrews, J.H. (1992) Biological control in the phyllosphere. Annual Review of Phytopathology 30: 603–635. http://doi.org/10.1146/annurev.py.30.090192.003131.

  3. Ariyawansa, H.A., Hyde, K.D., Jayasiri, S.C., Buyck, B., Kandawatte, W.T.C., CUI, Y.Y., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Jayawardena, R.S., Lücking, R., Ghobad-Nejhad, M., Niskanen, T., Thambugala, K.M., Voigt, K., Zhao, R.L., Boonmee, S., Bahkali, A.H., Chen, J., Cui, B.K., Dayarathne, M.C., Dissanayake, A.J., Ekanayaka, A.H., Hashimoto, A., Hongsanan, S., Jones, E.B.G., Larsson, E., Lewis, D., Li, W.J., Li, Q.R., Liu, J.K., Luo, Z.L., Maharachchikumbura, S.S.N., Mapook, A., Mckenzie, E.H.C., Norphanphoun, C., Pang, K.L., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Randrianjohany, E., Senanayake, I.C., Singtripop, C., Shang, Q., Tanaka, K., Tian, Q., Tian, C.M., Tibpromma, S., Verbeken, A., Abdel-Wahab, M.A., Wanasinghe, D.N., Wijayawardene, N.N., Zhang, J.F., Zhang, H., Abdel-Aziz, F.A., Adam, Č, ÍK, S., Ammirati, J.F., Bulgakov, T., Cabral, A.L., Callaghan, T.M., Callac, P., Chang, C.H., Coca, L.F., Dal-forno, M., Dollhofer, V., Fliegerová, K., Greiner, K., Griffith, G.W., Ho, H.M., Hofstetter, V., Jeewon, R., Kang, J.C., Kirk, P.M., Kytövuori, I., Lawrey, J.D., Li, J.X.H., Liu, Z.Y., Zhong, X.L., Liimatainen, K., Lumbsch, H.T., Matumura, M., Moncada, B., Nuankaew, S., Parnmen, S., Santiago, M.D.A., Sato, G., Sommai, S., Song, Y., De, souza, C.A.F., De, souza-motta, C.M., Su, H.Y., Suetrong, S., Wang, Y., Wei, S.F., Wen, T.C., Shen, H., Yuan, H.S., Zhou, L.W., Réblová, M., Fournier, J. & Camporesi, E. (2015) Fungal diversity notes 111–252: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 75: 27–274. https://doi.org/10.1007/s13225-015-0346-5

  4. Chomnunti, P., Schoch, C.L., Aguirre-Hudson, B., Ko-Ko, T.W., Hongsanan, S., Jones, E.B., Kodsueb, R., Phookamsak, R., Chukeatirote, E., Bahkali, A.H. & Hyde, K.D. (2011) Capnodiaceae. Fungal Diversity 51: 103–134. https://doi.org/10.1007/s13225-011-0145-6

  5. Chomnunti, P., Bhat, D.J., Jones, E.B.G., Chukeatirote, E., Bahkali, A.H. & Hyde, K.D. (2012) Trichomeriaceae, a new sooty mould family of Chaetothyriales. Fungal Diversity 56: 63–76. https://doi.org/10.1007/s13225-012-0197-2

  6. Chomnunti, P., Hongsanan, S., Aguirre-Hudson, B., Tian, Q., Alias, A.S., Xu, J., Liu, X., Stadler, M. & Hyde, K.D. (2014) The sooty moulds. Fungal Diversity 66: 1–36. https://doi.org/10.1007/s13225-014-0278-5

  7. De Hoog, G.S. & Papendorf, M.C. (1976) The genus Phaeoisaria. Persoonia 8: 407–414.

  8. Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S.N. & Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere 11: 2653–2677. http://doi.org/10.5943/mycosphere/11/1/18

  9. Hall, T. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98. http://doi.org/10.14601/Phytopathol_Mediterr-14998u1.29

  10. Hongsanan, S., Li, Y.M., Liu, J.K., Hofmann, T., Piepenbring, M., Bhat, D.J., Boonmee, S., Doilom, M., Singtripop, C., Tian, Q., Mapook, A., Zeng, X.Y., Bahkali, A.H., Xu, J.C., Mortimer, P.E., Wu, H.X., Yang, J.B. & Hyde, K.D. (2014) Revision of genera in Asterinales. Fungal Diversity 68: 1–68. https://doi.org/10.1007/s13225-014-0307-4

  11. Hongsanan, S., Hyde, K.D., Bahkali, A.H., Camporesi, E., Chomnunti, P., Ekanayaka, H., Gomes, A.A.M., Hofstetter, V., Jones, E.B.G., Pinho, D.B., Pereira, O.L., Tian, Q., Wanasinghe, D.N., Xu, J.-C. & Buyck, B. (2015a) Fungal biodiversity profiles 11–20. Cryptogamie Mycologie 36: 355–381.

  12. Hongsanan, S., Tian, Q., Hyde, K.D. & Chomnunti, P. (2015b) Two new species of sooty moulds, Capnodium coffeicola and Conidiocarpus plumeriae in Capnodiaceae. Mycosphere 6: 841–824. http://doi.org/10.5943/mycosphere/6/6/14

  13. Hughes, S.J. (1976) Sooty moulds. Mycologia 68: 693–820.

  14. Hyde, K.D., Jones, E.G.B., Liu, J.K., Ariyawansa, H.A., Boehm, E., Boonmee, S., Braun, U., Chomnunti, Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, L.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., De Hoog, S., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P., Phillips, A.J.L., Raja, H.A., Scheuer,C., Schumm, C., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. & Zhang, M. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1–313. https://doi.org/10.1007/s13225-013-0263-4

  15. Katoh, K. & Standley, D.M. (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010

  16. Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Ainsworth & Bisby’s dictionary of the Fungi, 10th ed. Wallingford, UK.

  17. Li, W.L., Maharachchikumbura, S.S.N., Cheewangkoon, R. & Liu, J.K. (2022) Reassessment of Dyfrolomyces and four new species of Melomastia from Olive (Olea europaea) in Sichuan Province, China. Journal of Fungi 8: 76. https://doi.org/10.3390/jof8010076

  18. Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799–1808. http://doi.org/10.1093/oxfordjournals.molbev.a026092

  19. Maharachchikumbura, S.S.N, Wanasinghe, D.N., Elgorban, A.M., Al-Rejaie, S.S., Kazerooni, E.A. & Cheewangkoon, R. (2022) Brunneosporopsis yunnanensis gen. et sp. nov. and Allocryptovalsa xishuangbanica sp. nov., New Terrestrial Sordariomycetes from Southwest China. Life 12: 635. http://doi.org/10.3390/life12050635

  20. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE) 14 Nov 2010. pp. 1–8. http://doi.org/10.1109/GCE.2010.5676129

  21. Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P. & Nieves-Aldrey, J. (2004) Bayesian phylogenetic analysis of combined data. Systematic Biology 53: 47–67. https://doi.org/10.1080/10635150490264699

  22. Promputtha, I., Hyde, K.D., Lumyong, P., McKenzie, E.H.C & Lumyong, S. (2003) Dokmaia monthadangii gen. et sp. nov., a synnematous anamorphic fungus on Manglietia garrettii. Sydowia 55: 99–103.

  23. Rambaut, A. (2012) FigTree version 1.4.0. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 20 June 2022)

  24. Rehner, S.A. & Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-αsequences: Evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. http://dx.doi.org/10.3852/mycologia.97.1.84

  25. Senanayake, I., Rathnayaka, A., Sandamali, D., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20

  26. Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033

  27. Swofford, D.L. (2002) PAUP: phylogenetic analysis using parsimony. Version 4.0b10. Illinois Natural History Survey, Champion, III.

  28. Verma, R.K., Prasher, I.B., Gautam, A.K., Rajeshkumar, K.C., Kumar, A. & Castañeda-Ruiz, R.F. (2021) Neosporidesmium himachalense sp. nov. from India and Neosporidesmina gen. nov. to accommodate N. micheliae. Mycotaxon 136: 587–595. https://doi.org/10.5248/136.587

  29. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990

  30. Wijayawardene, N., Hyde, K.D., Dai, D., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoðdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong, W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S.D.M.K., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. & Thines, M.(2022) Outline of Fungi and fungus-like taxa – 2021. Mycosphere 13: 53–453. http://doi.org/10.5943/mycosphere/13/1/2