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Type: Article
Published: 2022-09-14
Page range: 84-94
Abstract views: 38
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Hyphocapnodia sichuanensis gen. et sp. nov. (Capnodiaceae), a novel hyphomycete from Sichuan Province, China

Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China
Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County 654400, P.R. China
Departamento de Tecnología Médica, Facultad de Ciencias de la Salud, Universidad de Tarapacá, Sede Iquique, Av. Luis Emilio Recabarren 2477, Iquique, Chile
Center for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China
2 new taxa anamorph Dothideomycetes phylogeny sooty moulds Fungi

Abstract

A hyphomycetous sooty mould was collected on a dead bamboo (Bambusoideae, Gramineae) from a terrestrial habitat in Sichuan Province, China. To establish the phylogenetic position of newly collected sooty mould within the Capnodiales, we sequenced two rDNA regions, ITS1-5.8S-ITS2 (ITS) and 28S, and two protein-coding genes tef1-α and rpb2. Based on maximum likelihood and Bayesian analyses of a combined dataset and an examination of morphology, we describe and illustrate Hyphocapnodia gen. et sp. nov. Hyphocapnodia sichuanensis is characterized by subcylindrical, dark brown to black synnemata with monoblastic conidiogenous cells producing subcylindrical to fusiform, transversely septate, brown conidia with a truncate base.

References

<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Abdollahzadeh, J., Groenewald, J.Z., Coetzee, M.P., Wingfield, M.J. &amp; Crous, P.W. (2020) Evolution of lifestyles in Capnodiales. </span><span lang="en-GB"><em>Studies in Mycology </em></span><span lang="en-GB">95: 381–414. http://doi.org/10.1016/j.simyco.2020.02.004</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Andrews, J.H. (1992) Biological control in the phyllosphere. </span><span lang="en-GB"><em>Annual Review of Phytopathology</em></span><span lang="en-GB"> 30: 603–635. http://doi.org/10.1146/annurev.py.30.090192.003131. </span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Ariyawansa, H.A., Hyde, K.D., Jayasiri, S.C., Buyck, B., Kandawatte, W.T.C., CUI, Y.Y., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Jayawardena, R.S., Lücking, R., Ghobad-Nejhad, M., Niskanen, T., Thambugala, K.M., Voigt, K., Zhao, R.L., Boonmee, S., Bahkali, A.H., Chen, J., Cui, B.K., Dayarathne, M.C., Dissanayake, A.J., Ekanayaka, A.H., Hashimoto, A., Hongsanan, S., Jones, E.B.G., Larsson, E., Lewis, D., Li, W.J., Li, Q.R., Liu, J.K., Luo, Z.L., Maharachchikumbura, S.S.N., Mapook, A., Mckenzie, E.H.C., Norphanphoun, C., Pang, K.L., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Randrianjohany, E., Senanayake, I.C., Singtripop, C., Shang, Q., Tanaka, K., Tian, Q., Tian, C.M., Tibpromma, S., Verbeken, A., Abdel-Wahab, M.A., Wanasinghe, D.N., Wijayawardene, N.N., Zhang, J.F., Zhang, H., Abdel-Aziz, F.A., Adam, Č, ÍK, S., Ammirati, J.F., Bulgakov, T., Cabral, A.L., Callaghan, T.M., Callac, P., Chang, C.H., Coca, L.F., Dal-forno, M., Dollhofer, V., Fliegerová, K., Greiner, K., Griffith, G.W., Ho, H.M., Hofstetter, V., Jeewon, R., Kang, J.C., Kirk, P.M., Kytövuori, I., Lawrey, J.D., Li, J.X.H., Liu, Z.Y., Zhong, X.L., Liimatainen, K., Lumbsch, H.T., Matumura, M., Moncada, B., Nuankaew, S., Parnmen, S., Santiago, M.D.A., Sato, G., Sommai, S., Song, Y., De, souza, C.A.F., De, souza-motta, C.M., Su, H.Y., Suetrong, S., Wang, Y., Wei, S.F., Wen, T.C., Shen, H., Yuan, H.S., Zhou, L.W., Réblová, M., Fournier, J. &amp; Camporesi, E. (2015) Fungal diversity notes 111–252: taxonomic and phylogenetic contributions to fungal taxa.</span><span lang="en-GB"><em> Fungal Diversity</em></span><span lang="en-GB"> 75: 27–274. https://doi.org/10.1007/s13225-015-0346-5</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Chomnunti, P., Schoch, C.L., Aguirre-Hudson, B., Ko-Ko, T.W., Hongsanan, S., Jones, E.B., Kodsueb, R., Phookamsak, R., Chukeatirote, E., Bahkali, A.H. &amp; Hyde, K.D. (2011) Capnodiaceae. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 51: 103–134. https://doi.org/10.1007/s13225-011-0145-6</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Chomnunti, P., Bhat, D.J., Jones, E.B.G., Chukeatirote, E., Bahkali, A.H. &amp; Hyde, K.D. (2012) Trichomeriaceae, a new sooty mould family of Chaetothyriales. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 56: 63–76. https://doi.org/10.1007/s13225-012-0197-2</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Chomnunti, P., Hongsanan, S., Aguirre-Hudson, B., Tian, Q., Alias, A.S., Xu, J., Liu, X., Stadler, M. &amp; Hyde, K.D. (2014) The sooty moulds. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 66: 1–36. https://doi.org/10.1007/s13225-014-0278-5</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">De Hoog, G.S. &amp; Papendorf, M.C. (1976) The genus </span><span lang="en-GB"><em>Phaeoisaria</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Persoonia</em></span><span lang="en-GB"> 8: 407–414.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Dissanayake, A.J., Bhunjun, C.S., Maharachchikumbura, S.S.N. &amp; Liu, J.K. (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. </span><span lang="en-GB"><em>Mycosphere </em></span><span lang="en-GB">11: 2653–2677. http://doi.org/10.5943/mycosphere/11/1/18</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hall, T. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. </span><span lang="en-GB"><em>Nucleic Acids Symposium Series</em></span><span lang="en-GB"> 41: 95–98. http://doi.org/10.14601/Phytopathol_Mediterr-14998u1.29</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hongsanan, S., Li, Y.M., Liu, J.K., Hofmann, T., Piepenbring, M., Bhat, D.J., Boonmee, S., Doilom, M., Singtripop, C., Tian, Q., Mapook, A., Zeng, X.Y., Bahkali, A.H., Xu, J.C., Mortimer, P.E., Wu, H.X., Yang, J.B. &amp; Hyde, K.D. (2014) Revision of genera in </span><span lang="en-GB"><em>Asterinales</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Fungal Diversity </em></span><span lang="en-GB">68: 1–68. https://doi.org/10.1007/s13225-014-0307-4</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hongsanan, S., Hyde, K.D., Bahkali, A.H., Camporesi, E., Chomnunti, P., Ekanayaka, H., Gomes, A.A.M., Hofstetter, V., Jones, E.B.G., Pinho, D.B., Pereira, O.L., Tian, Q., Wanasinghe, D.N., Xu, J.-C. &amp; Buyck, B. (2015a) Fungal biodiversity profiles 11–20. </span><span lang="en-GB"><em>Cryptogamie Mycologie </em></span><span lang="en-GB">36: 355–381.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hongsanan, S., Tian, Q., Hyde, K.D. &amp; Chomnunti, P. (2015b) Two new species of sooty moulds, </span><span lang="en-GB"><em>Capnodium coffeicola</em></span><span lang="en-GB"> and </span><span lang="en-GB"><em>Conidiocarpus plumeriae</em></span><span lang="en-GB"> in Capnodiaceae. </span><span lang="en-GB"><em>Mycosphere</em></span><span lang="en-GB"> 6: 841–824. http://doi.org/10.5943/mycosphere/6/6/14</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hughes, S.J. (1976) Sooty moulds.</span><span lang="en-GB"><em> Mycologia</em></span><span lang="en-GB"> 68: 693–820.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Hyde, K.D., Jones, E.G.B., Liu, J.K., Ariyawansa, H.A., Boehm, E., Boonmee, S., Braun, U., Chomnunti, Crous, P.W., Dai, D.Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M.P., Pang, K.L., Phookamsak, R., Senanayake, L.C., Shearer, C.A., Suetrong, S., Tanaka, K., Thambugala, K.M., Wijayawardene, N.N., Wikee, S., Wu, H.X., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A., Bezerra, J.L., Bhat, D.J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D.L., Hirayama, K., De Hoog, S., Kang, J.C., Knudsen, K., Li, W.J., Li, X.H., Liu, Z.Y., Mapook, A., McKenzie, E.H.C., Miller, A.N., Mortimer, P., Phillips, A.J.L., Raja, H.A., Scheuer,C., Schumm, C., Taylor, J.E., Tian, Q., Tibpromma, S., Wanasinghe, D.N., Wang, Y., Xu, J.C., Yacharoen, S., Yan, J.Y. &amp; Zhang, M. (2013) Families of Dothideomycetes. </span><span lang="en-GB"><em>Fungal Diversity</em></span><span lang="en-GB"> 63: 1–313. https://doi.org/10.1007/s13225-013-0263-4</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Katoh, K. &amp; Standley, D.M. (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability.</span><span lang="en-GB"><em> Molecular Biology and Evolution</em></span><span lang="en-GB"> 30: 772–780. https://doi.org/10.1093/molbev/mst010</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Kirk, P.M., Cannon, P.F., Minter, D.W. &amp; Stalpers, J.A. (2008)</span><span lang="en-GB"><em> Ainsworth&nbsp;&amp;&nbsp;Bisby’s</em></span> <span lang="en-GB"><em>dictionary of the Fungi, 10th ed</em></span><span lang="en-GB">. Wallingford, UK.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Li, W.L., Maharachchikumbura, S.S.N., Cheewangkoon, R. &amp; Liu, J.K. (2022) Reassessment of </span><span lang="en-GB"><em>Dyfrolomyces</em></span><span lang="en-GB"> and four new species of </span><span lang="en-GB"><em>Melomastia</em></span><span lang="en-GB"> from Olive (</span><span lang="en-GB"><em>Olea europaea</em></span><span lang="en-GB">) in Sichuan Province, China. </span><span lang="en-GB"><em>Journal of Fungi</em></span><span lang="en-GB"> 8: 76. https://doi.org/10.3390/jof8010076</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Liu, Y.J., Whelen, S. &amp; Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. </span><span lang="en-GB"><em>Molecular Biology and Evolution</em></span><span lang="en-GB"> 16: 1799–1808. http://doi.org/10.1093/oxfordjournals.molbev.a026092</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Maharachchikumbura, S.S.N, Wanasinghe, D.N., Elgorban, A.M., Al-Rejaie, S.S., Kazerooni, E.A. &amp; Cheewangkoon, R. (2022) </span><span lang="en-GB"><em>Brunneosporopsis yunnanensis gen. et sp. nov.</em></span><span lang="en-GB"> and </span><span lang="en-GB"><em>Allocryptovalsa xishuangbanica sp. nov</em></span><span lang="en-GB">., New Terrestrial Sordariomycetes from Southwest China. </span><span lang="en-GB"><em>Life</em></span><span lang="en-GB"> 12: 635. http://doi.org/10.3390/life12050635</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Miller, M.A., Pfeiffer, W. &amp; Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. </span><span lang="en-GB"><em>In: Proceedings of the Gateway Computing Environments Workshop (GCE) 14 Nov 2010.</em></span><span lang="en-GB"> pp. 1–8. http://doi.org/10.1109/GCE.2010.5676129</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P. &amp; Nieves-Aldrey, J. (2004) Bayesian phylogenetic analysis of combined data.</span><span lang="en-GB"><em> Systematic Biology</em></span><span lang="en-GB"> 53: 47–67. https://doi.org/10.1080/10635150490264699</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Promputtha, I., Hyde, K.D., Lumyong, P., McKenzie, E.H.C &amp; Lumyong, S. (2003) </span><span lang="en-GB"><em>Dokmaia monthadangii</em></span><span lang="en-GB"> gen. et sp. nov., a synnematous anamorphic fungus on </span><span lang="en-GB"><em>Manglietia garrettii</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Sydowia</em></span><span lang="en-GB"> 55: 99–103.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Rambaut, A. (2012) FigTree version 1.4.0. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 20 June 2022)</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Rehner, S.A. &amp; Buckley, E. (2005) A </span><span lang="en-GB"><em>Beauveria</em></span><span lang="en-GB"> phylogeny inferred from nuclear ITS and EF1-αsequences: Evidence for cryptic diversification and links to </span><span lang="en-GB"><em>Cordyceps</em></span><span lang="en-GB"> teleomorphs. </span><span lang="en-GB"><em>Mycologia</em></span><span lang="en-GB"> 97: 84–98. http://dx.doi.org/10.3852/mycologia.97.1.84</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Senanayake, I., Rathnayaka, A., Sandamali, D., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. &amp; Xiang, M.M. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation.</span><span lang="en-GB"><em> Mycosphere</em></span><span lang="en-GB"> 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. </span><span lang="en-GB"><em>Bioinformatics </em></span><span lang="en-GB">30: 1312–1313. https://doi.org/10.1093/bioinformatics/btu033</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Swofford, D.L. (2002) PAUP: phylogenetic analysis using parsimony. Version 4.0b10. Illinois Natural History Survey, Champion, III.</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Verma, R.K., Prasher, I.B., Gautam, A.K., Rajeshkumar, K.C., Kumar, A. &amp; Castañeda-Ruiz, R.F. (2021) </span><span lang="en-GB"><em>Neosporidesmium</em></span> <span lang="en-GB"><em>himachalense</em></span><span lang="en-GB"> sp. nov. from India and </span><span lang="en-GB"><em>Neosporidesmina</em></span><span lang="en-GB"> gen. nov. to accommodate </span><span lang="en-GB"><em>N. micheliae</em></span><span lang="en-GB">. </span><span lang="en-GB"><em>Mycotaxon</em></span><span lang="en-GB"> 136: 587</span><span lang="en-GB">–</span><span lang="en-GB">595. https://doi.org/10.5248/136.587</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Vilgalys, R. &amp; Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several </span><span lang="en-GB"><em>Cryptococcus</em></span><span lang="en-GB"> species. </span><span lang="en-GB"><em>Journal of Bacteriology</em></span><span lang="en-GB"> 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990</span></span></span></span></p>
<p align="justify"><span style="color: #000000;"><span style="font-family: Times New Roman, serif;"><span style="font-size: small;"><span lang="en-GB">Wijayawardene, N., Hyde, K.D., Dai, D., Sánchez-García, M., Goto, B.T., Saxena, R.K., Erdoðdu, M., Selçuk, F., Rajeshkumar, K.C., Aptroot, A., Błaszkowski, J., Boonyuen, N., da Silva, G.A., de Souza, F.A., Dong, W., Ertz, D., Haelewaters, D., Jones, E.B.G., Karunarathna, S.C., Kirk, P.M., Kukwa, M., Kumla, J., Leontyev, D.V., Lumbsch, H.T., Maharachchikumbura, S.S.N., Marguno, F., Martínez-Rodríguez, P., Mešić, A., Monteiro, J.S., Oehl, F., Pawłowska, J., Pem, D., Pfliegler, W.P., Phillips, A.J.L., Pošta, A., He, M.Q., Li, J.X., Raza, M., Sruthi, O.P., Suetrong, S., Suwannarach, N., Tedersoo, L., Thiyagaraja, V., Tibpromma, S., Tkalčec, Z., Tokarev, Y.S., Wanasinghe, D.N., Wijesundara, D.S.A., Wimalaseana, S.D.M.K., Madrid, H., Zhang, G.Q., Gao, Y., Sánchez-Castro, I., Tang, L.Z., Stadler, M., Yurkov, A. &amp; Thines, M.(2022) Outline of Fungi and fungus-like taxa – 2021. </span><span lang="en-GB"><em>Mycosphere</em></span><span lang="en-GB"> 13: 53–453. http://doi.org/10.5943/mycosphere/13/1/2</span></span></span></span></p>