Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2016-04-25
Page range: 401–429
Abstract views: 186
PDF downloaded: 1

Two new Bent-toed Geckos of the Cyrtodactylus pulchellus complex from Peninsular Malaysia and multiple instances of convergent adaptation to limestone forest ecosystems

Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515 USA.
Department of Biology, Brigham Young University, 150 East Bulldog Boulevard, Provo, Utah 84602 USA.
School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Penang, Malaysia Center for Marine and Coastal Studies, Universiti Sains Malaysia, 11800 Minden, Pulau Pinang, Malaysia.
Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515 USA.
School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Penang, Malaysia
Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515 USA.
School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Penang, Malaysia.
Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515 USA.
Department of Biology, Brigham Young University, 150 East Bulldog Boulevard, Provo, Utah 84602 USA. Departamento de Herpetología, Museo de Historia Natural de San Marcos (MUSM), Av. Arenales 1256, Jesús María, Lima, Peru. Instituto de Ciencias Biológicas Antonio Raimondi, Facultad de Ciencias Biológicas,Universidad Nacional Mayor de San Marcos, Lima, Peru.
Department of Biology, Brigham Young University, 150 East Bulldog Boulevard, Provo, Utah 84602 USA.
Herpetology Laboratory, Department of Biology, La Sierra University, 4500 Riverwalk Parkway, Riverside, California 92515 USA.
Instituto de Ciencias Biológicas Antonio Raimondi, Facultad de Ciencias Biológicas,Universidad Nacional Mayor de San Marcos, Lima, Peru.
Department of Biology, Brigham Young University, 150 East Bulldog Boulevard, Provo, Utah 84602 USA.
Karst new species convergent evolution conservation extinction Cyrtodactylus Peninsular Malaysia Thai-Malay Peninsula Reptilia

Abstract

A new species of limestone cave-adapted gecko of the Cyrtodactylus pulchellus complex, C. hidupselamanya sp. nov., is described from an isolated karst formation at Felda Chiku 7, Kelantan, Peninsular Malaysia. This formation is scheduled to be completely quarried for its mineral content. From what we know about the life history of C. hidupselamanya sp. nov., this will result in its extinction. A new limestone forest-adapted species, C. lenggongensis sp. nov., from the Lenggong Valley, Perak was previously considered to be conspecific with C. bintangrendah but a re-evaluation of morphological, color pattern, molecular, and habitat preference indicates that it too is a unique lineage worthy of specific recognition. Fortunately C. lenggongensis sp. nov. is not facing extinction because its habitat is protected by the UNESCO Archaeological Heritage of the Lenggong Valley due to the archaeological significance of that region. Both new species can be distinguished from all other species of Cyrtodactylus based on molecular evidence from the mitochondrial gene ND2 and its flanking tRNAs as well as having unique combinations of morphological and color pattern characteristics. Using a time-calibrated BEAST analysis we inferred that the evolution of a limestone habitat preference and its apparently attendant morphological and color pattern adaptations evolved independently at least four times in the C. pulchellus complex between 26.1 and 0.78 mya.

References

  1. Alström, P., Davidson, P., Duckworth, J.W., Eames, J.C., Trai, T.L., Nguyen, C., Ollson, U., Robinson, C. & Timmins, R. (2010) Description of a new species of Phylloscopus warbler from Vietnam and Laos. Ibis, 152, 145–168.
    http://dx.doi.org/10.1111/j.1474-919X.2009.00990.x

    Boulenger, G.A. (1912) A Vertebrate Fauna of the Malay Peninsula from the Isthmus of Kra to Singapore Including the Adjacent Islands. Reptilia and Batrachia. Taylor & Francis, London, 294 pp.

    Cantor, T.E. (1847) Catalogue of reptiles inhabiting the Malayan Peninsula and islands, collected or observed by Theodore Cantor, Esq., M.D. Bengal Medical Services. Journal of the Asiatic Society of Bengal, 16, 607–656, 897–952, 1026–1078.

    Chan-ard, T.,Grossmann, W., Gumprecht, A. & Schultz, K.-D. (1999) Amphibians and Reptiles of Peninsular Malaysia and Thailand. Bushmaster Publications, Wuerselen, 240 pp.

    Clements, R., Sodhi, N.S., Schilthuizen, M. & Ng, P.K.L. (2006) Limestone karsts of Southeast Asia: imperiled arks of biodiversity. BioScience, 56, 733–742.
    http://dx.doi.org/10.1641/0006-3568(2006)56[733:LKOSAI]2.0.CO;2

    Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. & Wilson, A. (2011) Geneious V5.4. Available from: http://www.geneious.com/ (accessed 15 March 2016)

    Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian Phylogenetics with BEAUti and BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973.
    http://dx.doi.org/10.1093/molbev/mss075

    Flower, S.S. (1896) Notes on a second collection of batrachians made in the Malay Peninsula 1895–96, with a list of the species recorded from that region. Proceedings of the Zoological Society of London, 1896, 856–914.

    Gray, J.E. (1827) A synopsis of the genera of saurian reptiles, in which some new genera are introduced, and the others reviewed by actual examination. Philosophical Magazine, 2, 54–58.

    Grismer, L.L. (1988) Phylogeny, taxonomy, classification, and biogeography of eublepharid geckos. In: Estes, R. & Pregill, G. (Eds.), Phylogenetic Relationships of the Lizard Families. Stanford University Press, Stanford, pp. 369-–469.

    Grismer, L.L. (2011) Lizards of Peninsular Malaysia, Singapore and Their Adjacent Archipelagos. Edition Chimaira, Frankfurt am Main, 728 pp.

    Grismer, L.L., Belabut, D.M., Quah, S.H., Chan, K.O., Wood Jr., P.L. & Hashim, R. (2014d) A new species of karst forest-adapted Bent-toed Gecko (Genus Cyrtodactylus) belonging to the C. sworderi complex from a threatened karst forest in Perak, Peninsular Malaysia. Zootaxa, 3755 (5), 434–466.
    http://dx.doi.org/10.11646/zootaxa.3755.5.3

    Grismer, L.L. & Norhayati, A. (2008) A new insular species of Cyrtodactylus (Squamata: Gekkonidae) from the Langkawi Archipelago, Kedah, Peninsular Malaysia. Zootaxa, 1924, 53–68.

    Grismer, L.L., Wood Jr., P.L., Anuar, S., Davis, H.R, Cobos, A.J. & Murdoch, M.L. (2016) A new species of karst forest Bent-toed Gecko (genus Cyrtodactylus Gray) not yet threatened by foreign cement companies and a summary of Peninsular Malaysia’s endemic karst forest herpetofauna and the need for its conservation. Zootaxa, 4061 (1), 1–17.
    http://dx.doi.org/10.11646/zootaxa.4061.1.1

    Grismer, L.L., Wood Jr., P.L., Anuar, S., Quah, E.S.H., Muin, M.A., Mohamed, M., Chan, K.O., Sumarli, A.X., Loredo, A.I. & Heinz, H.M. (2014a) The phylogenetic relationships of three new species of the Cyrtodactylus pulchellus complex (Squamata: Gekkonidae) from poorly explored regions in northeastern Peninsular Malaysia. Zootaxa, 3786 (3), 359–381.
    http://dx.doi.org/10.11646/zootaxa.3786.3.6

    Grismer, L.L., Wood Jr., Chan, P.L., Anuar, K.O. & Muin, M.A. (2014c) Cyrts in the city: A new Bent-toed Gecko (Genus Cyrtodactylus) is the only endemic species of vertebrate from Batu Caves, Selangor, Peninsular Malaysia. Zootaxa, 3774 (4), 381–394.
    http://dx.doi.org/10.11646/zootaxa.3774.4.6

    Grismer, L.L., Wood Jr., P.L., Ngo, V.T. & Murdoch, L.M. (2015) The systematics and independent evolution of cave ecomorphology in distantly related clades of Bent-toed Geckos (Genus Cyrtodactylus Gray, 1827) from the Mekong Delta and islands in the Gulf of Thailand. Zootaxa, 3980 (1), 106–126.
    http://dx.doi.org/10.11646/zootaxa.3980.1.6

    Grismer, L.L., Wood Jr., P.L., Quah, E.S.H., Anuar, S., Muin, M.A. Sumontha, M., Norhayati, A., Bauer, A.M., Wangkulangkul, S., Grismer, J.L. & Pauwels, O.S.G. (2012) A phylogeny and taxonomy of the Thai-Malay Peninsula Bent-toed Geckos of the Cyrtodactylus pulchellus complex (Squamata: Gekkonidae): combined morphological and molecular analyses with descriptions of seven new species. Zootaxa, 3520, 1–55.

    Grismer, L.L., Wood Jr., P.L., Anuar, S., Riyanto, A., Norhayati, A., Muin, M.A, Sumontha, M., Grismer, J.L., Chan, K.O., Quah, E.S.H. & Pauwels, O.S.G. (2014d) Systematics and natural history of Southeast Asian Rock Geckos (genus Cnemaspis Strauch, 1887) with descriptions of eight new species from Malaysia, Thailand, and Indonesia. Zootaxa, 3880 (1), 1–47.
    http://dx.doi.org/10.11646/zootaxa.3880.1.1

    Huelsenbeck, J.P., Ronquist, F., Nielsen, R. & Bollback, J.P. (2001) Bayesian Inference of phylogeny and its impact on evolutionary biology. Science, 294, 2310–2314.
    http://dx.doi.org/10.1126/science.1065889

    Jenkins, P.D., Kilpatrick, C., William, C., Robinson, M.F. & Timmins, R.J. (2004) Morphological and molecular investigations of a new family, genus and species of rodent (Mammalia: Rodentia: Hystricognatha) from Lao PDR. Systematics and Biodiversity, 2, 419–454.
    http://dx.doi.org/10.1017/S1477200004001549

    Kiew, R. (1998) Limestone, Quartzite and Ultramafic Vegetation. In: Soepadmo (Ed.), The Encyclopedia of Malaysia: Plants. Editions Didier Miller, Singapore, pp. 26–27.

    Losos, J.J. (2009) Lizards in an Evolutionary Tree: Ecology and Adaptive Radiation of Anoles. University of California Press, Berkeley, 243 pp.

    Macey, J. & Schulte, J. (1999) Molecular phylogenetics, tRNA evolution, and historical biogeography in anguid lizards and related taxonomic families. Molecular Phylogenetics and Evolution, 12, 250–272.
    http://dx.doi.org/10.1006/mpev.1999.0615

    Maddison, W.P. & Maddison, D.R. (2015) Mesquite: a modular system for evolutionary analysis. Version 3.04. Available from: http://mesquiteproject.org (accessed 15 March 2016)

    Manthey, U. & Grossmann, W. (1997) Amphibien & Reptilien Südostasiens. Natur und Tier-Verlag, Münster, 512 pp.

    Minh, Q., Nguyen, M.A.T. & von Haeseler, A. (2013) Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30, 1188–1195.
    http://dx.doi.org/10.1093/molbev/mst204

    Nguyen, L.-T., Schmidt, H.A., von Haeseler, A., Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274.
    http://dx.doi.org/10.1093/molbev/msu300

    Price, L. (2014) Caves and Karst of Peninsular Malaysia. A Register. 2nd Edition. Berliner Höhlenkundliche Berichte, Band 54, 1–220.

    Siler, C.D., Oaks, J.R., Esselstyn, J.A., Diesmos, A.C. & Brown, R.M. (2010) Phylogeny and biogeography of Philippine bent–toed geckos (Gekkonidae: Cyrtodactylus) contradict a prevailing model of Pleistocene diversification. Molecular Phylogenetics and Evolution, 55, 699–710.
    http://dx.doi.org/10.1016/j.ympev.2010.01.02

    Sumontha, M., Pauwels, O.S.G., Kunya, K., Nitikul, A., Samphanthamit, P. & Grismer, L.L. (2012) A new forest-dwelling gecko from Phuket Island, Southern Thailand, related to Cyrtodactylus macrotuberculatus (Squamata: Gekkonidae). Zootaxa, 3522, 61–72.

    Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA 6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30, 2725–2729.
    http://dx.doi.org/10.1093/molbev/mst197

    Taylor, E.H. (1963) The lizards of Thailand. University of Kansas Science Bulletin, 44, 87–1077.

    Wilcox, T.P., Zwickl, D.J., Heath, T.A. & Hillis, D.M. (2002) Phylogenetic relationships of the Dwarf Boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution, 25, 361–371.
    http://dx.doi.org/10.1016/S1055-7903(02)00244-0

    Wood Jr., P.L., Grismer, L.L., Aowphol, A., Aguilar, C., Cota, M.L., Grismer, M.S., Murdoch, M. & Sites Jr., J.W. (2016) Three new karst-adapted Cnemaspis Boulenger (Squamata; Gekkonidae) from southern Thailand. Evolution. [ in prep.]

    Wood Jr., P.L., Heinicke, M.P., Jackman, T.R. & Bauer, A.M. (2012) Phylogeny of bent-toed geckos (Cyrtodactylus) reveals a west to east pattern of diversification. Molecular Phylogenetics and Evolution, 65, 992–1003.
    http://dx.doi.org/10.1016/j.ympev.2012.08.025

    Woxvold, I.A., Duckworth, J.W. & Timmins, R.J. (2009) An unusual new bulbul (Passeriformes: Pyconotidae) from the limestone karst of Lao PDR. Forktail, 25, 1–12.

    Zhaoran, X., Burtt, B.L., Skog, L.E. & Middleton, D.J. (2008) A revision of Paraboea (Gesneriaceae). Edinburgh Journal of Botany, 65, 161–347.