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Type: Article
Published: 2018-04-04
Page range: 201–244
Abstract views: 240
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Species delimitation in the Gehyra nana (Squamata: Gekkonidae) complex: cryptic and divergent morphological evolution in the Australian Monsoonal Tropics, with the description of four new species

Department of Terrestrial Zoology, Western Australian Museum, 49 Kew Street, Welshpool, Western Australia, 6016, Australia
Division of Evolution, Ecology and Genetics, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, Building 116, Daley Road, Acton, ACT, 2601, Australia
Division of Evolution, Ecology and Genetics, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, Building 116, Daley Road, Acton, ACT, 2601, Australia
Ecology and Evolution, School of Environment and Science, Griffith University, 170 Kessels Rd, Nathan, QLD, 4111, Australia, and Biodiversity and Geosciences Program, Queensland Museum, PO Box 3300, South Brisbane, QLD, 4101, Australia
Ecology and Evolution, School of Environment and Science, Griffith University, 170 Kessels Rd, Nathan, QLD, 4111, Australia, and Biodiversity and Geosciences Program, Queensland Museum, PO Box 3300, South Brisbane, QLD, 4101, Australia
Department of Biodiversity, Conservation, and Attractions, Western Australia, 6983, Australia
Department of Biodiversity, Conservation, and Attractions, Western Australia, 6983, Australia
Reptilia Australian Monsoonal Tropics cryptic speciation gecko Gehyra granulum sp. nov. Gehyra multiporosa Gehyra paranana sp. nov. Gehyra pluraporosa sp. nov. Gehyra pseudopunctata sp. nov. Kimberley lizard Northern Territory Top End Western Australia

Abstract

Recent advances in molecular genetic techniques and increased fine scale sampling in the Australian Monsoonal Tropics (AMT) have provided new impetus to reassess species boundaries in the Gehyra nana species complex, a clade of small-bodied, saxicolous geckos which are widely distributed across northern Australia. A recent phylogenomic analysis revealed eight deeply divergent lineages that occur as a series of overlapping distributions across the AMT and which, as a whole, are paraphyletic with four previously described species. Several of these lineages currently included in G. nana are phenotypically distinct, while others are highly conservative morphologically. Here we use an integrated approach to explore species delimitation in this complex. We redefine G. nana as a widespread taxon with complex genetic structure across the Kimberley of Western Australia and Top End of the Northern Territory, including a lineage with mtDNA introgressed from the larger-bodied G. multiporosa. We describe four new species with more restricted distributions within the G. nana complex. The new species are phylogenetically divergent and morphologically diagnosable, and include the relatively cryptic G. paranana sp. nov. from the western Northern Territory, the large-bodied G. pseudopunctata sp. nov. from the southern Kimberley ranges, G. granulum sp. nov., a small-bodied form with granules on the proximal lamellae from the north-west and southern Kimberley ranges and the small-bodied G. pluraporosa sp. nov. restricted to the northern Kimberley. Our revision largely stabilises the taxonomy of the G. nana complex, although further analyses of species limits among the remaining mostly parapatric lineages of G. nana sensu stricto are warranted.

 

References

  1. Afonso Silva, A.C., Santos, N., Ogilvie, H.A. & Moritz, C. (2017a) Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology. PeerJ, 5, e3724.
    https://doi.org/10.7717/peerj.3724

    Afonso Silva, A.S., Bragg, J.G., Potter, S., Fernandes, C., Coelho, M. & Moritz, C. (2017b) Tropical specialist versus climate generalist: diversification and demographic history of sister species of Carlia from northwest Australia. Molecular Ecology, 26, 4045–4058.
    https://doi.org/10.1111/mec.14185

    Börner, A.R. & Schüttler, B.I. (1983) An additional note on the Australian geckos of the genus Gehyra. Miscellaneous Articles in Saurology, 12, 1–4.

    Bourke, G., Pratt, R., Vanderduys, E. & Moritz, C. (2017) Systematics of a small Gehyra (Squamata: Gekkonidae) from the Einasleigh Uplands, Queensland: description of a new range restricted species. Zootaxa, 4231, 88–95.
    https://doi.org/10.11646/zootaxa.4231.1.5

    Carstens, B.C., Pelletier, T.A., Reid, N.M. & Satler, J.D. (2013) How to fail at species delimitation. Molecular Ecology, 22, 4369–4383.
    https://doi.org/10.1111/mec.12413

    Dayrat, B. (2005) Towards integrative taxonomy. Biological Journal of the Linnean Society, 85, 407–415.
    https://doi.org/10.1111/j.1095-8312.2005.00503.x

    Doughty, P., Ellis, R.J. & Oliver, P.M. (2016) Many things come in small packages: Revision of the clawless geckos (Crenadactylus: Diplodactylidae) of Australia. Zootaxa, 4168 (2), 239–278.
    https://doi.org/10.11646/zootaxa.4168.2.2

    Doughty, P., Palmer, R., Sistrom, M.J., Bauer, A.M. & Donnellan, S.C. (2012) Two new species of Gehyra (Squamata: Gekkonidae) geckos from the north-west Kimberley region of Western Australia. Records of the Western Australian Museum, 27, 117–134.
    https://doi.org/10.18195/issn.0312-3162.27(2).2012.117-134

    Ellis, R.J., Doughty, P. & Bauer, A.M. (2018) An annotated type catalogue of the geckos and pygopods (Squamata: Gekkota: Carphodactylidae, Diplodactylidae, Gekkonidae, Pygopodidae) in the collection of the Western Australian Museum. Records of the Western Australian Museum: in press.

    Fry, D.B. (1914) On a collection of reptiles and batrachians from Western Australia. Records of the Western Australian Museum and Art Gallery, 1, 174–210.

    Fujita, M.K., Leaché, A.D., Burbrink, F.T., McGuire, J.A. & Moritz, C. (2012) Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology and Evolution, 27, 480–488.
    https://doi.org/10.1016/j.tree.2012.04.012

    Garcia-Porta, J., Morales, H.E., Gómez-Díaz, E., Sindaco, R. & Carranza, S. (2016) Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago. Molecular Phylogenetics and Evolution, 98, 288–299.
    https://doi.org/10.1016/j.ympev.2016.02.007

    Gibson, L.A. (2014) Biogeographic patterns on Kimberley islands, Western Australia. Records of the Western Australian Museum, 81 (Supplement), 245–280.
    https://doi.org/10.18195/issn.0313-122x.81.2014.255-280

    Glaw, F., Köhler, J., de la Riva, I., Vieites, D.R. & Vences, M. (2010) Integrative taxonomy of malagasy treefrogs: Combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis. Zootaxa, 2383, 1–82.

    Heinicke, M.P., Greenbaum, E., Jackman, T.R. & Bauer, A.M. (2011) Phylogeny of a trans-Wallacean radiation (Squamata, Gekkonidae, Gehyra) supports a single early colonization of Australia. Zoologica Scripta, 40, 584–602.
    https://doi.org/10.1111/j.1463-6409.2011.00495.x

    Heinicke, M.P., Jackman, T.R. & Bauer, A.M. (2017) The measure of success: geographic isolation promotes diversification in Pachydactylus geckos. BMC Evolutionary Biology, 17, 9.
    https://doi.org/10.1186/s12862-016-0846-2

    Hutchinson, M.N., Doughty, P. & Oliver, P.M. (2009) Taxonomic revision of the stone geckos (Squamata: Diplodactylidae: Diplodactylus) of southern Australia. Zootaxa, 2167, 25–46.
    https://doi.org/10.11646/zootaxa.2167.1.2

    Hutchinson, M.N., Sistrom, M.J., Donnellan, S.C. & Hutchinson, R.G. (2014) Taxonomic revision of the Australian arid zone lizards Gehyra variegata and G. montium (Squamata, Gekkonidae) with description of three new species. Zootaxa, 3814 (2), 221–241.
    https://doi.org/10.11646/zootaxa.3814.2.4

    King, M. (1979) Karyotypic evolution in Gehyra (Gekkonidae: Reptilia) I. the Gehyra variegata-punctata complex. Australian Journal of Zoology, 27, 331–347.
    https://doi.org/10.1071/ZO9790373

    King, M. (1984) A new species of Gehyra (Reptilia: Gekkonidae) from Northern Western Australia. Transactions of the Royal Society of South Australia, 108, 113–117.

    Kuhn, M., Wing, J., Weston, S., Williams, A., Keefer, C. & Engelhardt, A. (2012) Caret: Classification and Regression Training. Available from: https://Cran.R-Project.Org/Package=Caret (accessed 26 February 2018)

    Laver, R., Doughty, P. & Oliver, P. (2018) Origins and patterns of endemism in two specialised lizard lineages from the Australian Monsoonal Tropics (Oedura spp.). Journal of Biogeography, 45 (1), 142–153.
    https://doi.org/10.1111/jbi.13127

    Leaché, A.D. & Fujita, M.K. (2010) Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proceedings of the Royal Society B: Biological Sciences, 277, 3071–3077.
    https://doi.org/10.1098/rspb.2010.0662

    Leaché, A.D., Koo, M.S., Spencer, C.L., Papenfuss, T.J., Fisher, R.N. & McGuire, J.A. (2009) Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma). Proceedings of the National Academy of Sciences, 106, 12418–12423.
    https://doi.org/10.1073/pnas.0906380106

    Losos, J. (2009) Lizards in and Evolutionary Tree: Ecology and Adaptive Radiation of Anoles. University of California Press, Berkeley, xx + 507 pp.

    Miralles, A. & Vences, M. (2013) New metrics for comparison of taxonomies reveal striking discrepancies among species delimitation methods in Madascincus lizards. PLoS ONE, 8 (7), e68242.
    https://doi.org/10.1371/journal.pone.0068242

    Mitchell, F.J. (1965) Australian geckos assigned to the genus Gehyra Gray (Reptilia, Gekkonidae). Senckenbergiana Biologica, 46, 287–319.

    Moritz, C. (1986) The population biology of Gehyra (Gekkonidae): Chromosome change and speciation. Systematic Biology, 35, 46–67.
    https://doi.org/10.1093/sysbio/35.1.46

    Moritz, C., Pratt, R.C., Bank, S., Bourke, G., Bragg, J.G., Doughty, P., Keogh, J.S., Laver, R.J., Potter, S., Teasdale, L.C., Tedeschi, L.G. & Oliver, P.M. (2018) Cryptic lineage diversity, body size divergence and sympatry in a species complex of Australian lizards (Gehyra). Evolution, 72, 54–66.
    https://doi.org/10.1111/evo.13380

    Oliver, P.M., Bourke, G., Pratt, R.C., Doughty, P. & Moritz, C. (2016) Systematics of small Gehyra (Squamata: Gekkonidae) of the southern Kimberley, Western Australia: redescription of G. kimberleyi Börner & Schüttler, 1983 and description of a new restricted range species. Zootaxa, 4107 (1), 49–64.
    https://doi.org/10.11646/zootaxa.4107.1.2

    Oliver, P.M. & Doughty, P. (2016) Systematic revision of the marbled velvet geckos (Oedura marmorata species complex, Diplodactylidae) from the Australian arid and semi-arid zones. Zootaxa, 4088 (2), 151–176.
    https://doi.org/10.11646/zootaxa.4088.2.1

    Oliver, P.M., Doughty, P. & Palmer, R. (2012) Hidden biodiversity in rare northern Australian vertebrates: The case of the clawless geckos (Crenadactylus, Diplodactylidae) of the Kimberley. Wildlife Research, 39, 429–435.
    https://doi.org/10.1071/WR12024

    Oliver, P., Keogh, J.S. & Moritz, C. (2015) New approaches to cataloguing and understanding evolutionary diversity: A perspective from Australian herpetology. Australian Journal of Zoology, 62, 417–430.
    https://doi.org/10.1071/ZO14091

    Oliver, P.M., Laver, R.J., Smith, K.L. & Bauer, A.M. (2014b) Long-term persistence and vicariance within the Australian Monsoonal Tropics: the case of the giant cave and tree geckos (Pseudothecadactylus). Australian Journal of Zoology, 61, 462–468.
    https://doi.org/10.1071/ZO13080

    Oliver, P.M., Laver R.J., De Mello Martins, F., Pratt, R., Hunjan, S. & Moritz, C.C. (2017) A novel hotspot of vertebrate endemism and an evolutionary refugia in northern Australia. Diversity and Distributions, 23, 53–66.
    https://doi.org/10.1111/ddi.12506

    Oliver, P.M., Skipwith, P. & Lee, M.S.Y. (2014a) Crossing the line: increasing body size in a trans-Wallacean lizard radiation. Biology Letters, 10, 20140479.
    https://doi.org/10.1098/rsbl.2014.0479

    Padial, J.M., Miralles, A., De la Riva, I. & Vences, M. (2010) The integrative future of taxonomy. Frontiers in Zoology, 7, 16.
    https://doi.org/10.1186/1742-9994-7-16

    Palmer, R., Pearson, D.J., Cowan, M.A. & Doughty, P. (2013) Islands and scales: a biogeographic survey of reptiles on Kimberley islands, Western Australia. Records of the Western Australian Museum, 81 (Supplement), 183–204.
    https://doi.org/10.18195/issn.0313-122x.81.2013.183-204

    Pepper, M., Doughty, P., Fujita, M.K., Moritz, C. & Keogh, J.S. (2013) Speciation on the rocks: Integrated systematics of the Heteronotia spelea species complex (Gekkota; Reptilia) from western and central Australia. PLoS ONE, 11, e78110.
    https://doi.org/10.1371/journal.pone.0078110

    Potter, S., Bragg, J.G., Peter, B.M., Bi, K. & Moritz, C. (2016) Phylogenomics at the tips: Inferring lineages and their demographic history in a tropical lizard, Carlia amax. Molecular Ecology, 25, 1367–1380.
    https://doi.org/10.1111/mec.13546

    Pyron, R.A. & Burbrink, F.T. (2009) Lineage diversification in a widespread species: Roles for niche divergence and conservatism in the common kingsnake, Lampropeltis getula. Molecular Ecology, 18, 3443–3457.
    https://doi.org/10.1111/j.1365-294X.2009.04292.x

    R Core Team (2016) Vienna, Austria. R: A language and environment for statistical computing. Available from: http://www.r-project.org/ (accessed 25 February 2017)

    Rannala, B. (2015) The art and science of species delimitation. Current Zoology, 61, 846–853.
    https://doi.org/10.1093/czoolo/61.5.846

    Rosauer, D.F., Blom, M.P.K., Bourke, G., Catalano, S., Donnellan, S., Gillespie, G., Mulder, E., Oliver, P.M., Potter, S., Pratt, R.C., Rabosky, D.L., Skipwith, P.L. & Moritz, C. (2016) Phylogeography, hotspots and conservation priorities: an example from the Top End of Australia. Biological Conservation, 204, 83–93.
    https://doi.org/10.1016/j.biocon.2016.05.002

    Rosauer, D.F., Byrne, M., Blom, M.P.K., Coates, D.J., Donnellan, S., Doughty, P., Keogh, J.S., Kinloch, J., Laver, R.J., Myers, C., Oliver, P.M., Potter, S., Rabosky, D.L., Afonso Silva, A.C., Smith, J. & Moritz, C. (2018) Real-world conservation planning for evolutionary diversity in the Kimberley, Australia, sidesteps uncertain taxonomy. Conservation Letters. [published online]
    https://doi.org/10.1111/conl.12438

    Shea, G., Couper, P., Wilmer, J.W. & Amey, A. (2011) Revision of the genus Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) in Australia. Zootaxa, 3146, 1–63

    Simó-Riudalbas, M., Pous, P. de, Els, J., Jayasinghe, S., Péntek-Zakar, E., Wilms, T., Al-Saadi, S. & Carranza, S. (2017) Cryptic diversity in Ptyodactylus (Reptilia: Gekkonidae) from the northern hajar mountains of Oman and the United Arab Emirates uncovered by an integrative taxonomic approach. PLoS ONE, 12 (8), e0180397.
    https://doi.org/10.1371/journal.pone.0180397

    Singhal, S. & Bi, K. (2017) History cleans up messes: The impact of time in driving divergence and introgression in a tropical suture zone. Evolution, 71, 1888–1899.
    https://doi.org/10.1111/evo.13278

    Singhal, S., Hoskin, P., Couper, S., Potter, S. & Moritz, C. (in revision) A framework for resolving cryptic species: a case study from the lizards of the Australian wet tropics.

    Sistrom, M., Edwards, D.L., Donnellan, S. & Hutchinson, M. (2012) Morphological differentiation correlates with ecological but not with genetic divergence in a Gehyra gecko. Journal of Evolutionary Biology, 25, 647–660.
    https://doi.org/10.1111/j.1420-9101.2012.02460.x

    Sistrom, M., Donnellan, S.C. & Hutchinson, M.N. (2013) Delimiting species in recent radiations with low levels of morphological divergence: A case study in Australian Gehyra geckos. Molecular Phylogenetics and Evolution, 68, 135–143.
    https://doi.org/10.1016/j.ympev.2013.03.007

    Sistrom, M.J., Hutchinson, M.N., Hutchinson, R.G. & Donnellan, S.C. (2009) Molecular phylogeny of Australian Gehyra (Squamata: Gekkonidae) and taxonomic revison of Gehyra variegata in south-eastern Australia. Zootaxa, 32, 14–32.

    Storr, G.M. (1978) Seven new gekkonid lizards from Western Australia. Records of the Western Australian Museum, 6, 337–352 .

    Sukumaran, J. & Knowles, L.L. (2017) Multispecies coalescent delimits structure, not species. Proceedings of the National Academy of Sciences, 114, 1607–1612.
    https://doi.org/10.1073/pnas.1607921114

    Venables, W.N. & Ripley, B.D. (2002) MASS: modern applied statistics with S. Issues of Accuracy and Scale, 2002, 868.