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Type: Article
Published: 2018-07-02
Page range: 427–440
Abstract views: 61
PDF downloaded: 3

Multi-locus phylogeny of southern African Acontias aurantiacus (Peters) subspecies (Scincidae: Acontinae) confirms the presence of three genetically, geographically and morphologically discrete taxa

Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa.
Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa.
Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa.
Reptilia Typhlosaurus aurantiacus fitzsimonsi parietalis phylogeny

Abstract

Acontias aurantiacus (Peters) presently consists of five subspecies that are largely restricted to the coastal regions and offshore islands of Mozambique and northern South Africa, with subspecies being defined on the basis of morphological differences and/or parapatric distributions. In this study one nuclear (RAG1) and two mitochondrial (cyt b and 16S) genes of 30 individuals sampled from four Mozambican and five South African localities were used to assess the taxonomic relationships of three mainland A. aurantiacus subspecies. Our analyses suggest that A. aurantiacus is a species complex that is sister to A. bicolor (Hewitt), A. cregoi (Boulenger) and A. rieppeli (Sternfeld). Our molecular results support other lines of evidence (consistent morphological differences and parapatric distributions between the subspecies) in suggesting that each of these subspecies are taxonomically distinct. In light of this, and supported by the genetic distances between these subspecies which exceed those of other recognised Acontias species, we propose elevating A. fitzsimonsi (Broadley) and A. parietalis (Broadley) to specific status. Our results further suggest that the melanistic and typically-coloured forms of each taxon are nested within the same clades, supporting previous contentions that melanistic individuals are not cryptic taxa.

 

References

  1. Bauer, A.M. (2014) Acontias poecilus Bourquin & Lambiris, 1996. In: Bates, M.F., Branch, W.R., Bauer, A.M., Burger, M., Marais, J., Alexander, G.J. & De Villiers, M.S. (Eds.), Atlas and Red List of the Reptiles of South Africa, Lesotho and Swaziland. Suricata 1. South African National Biodiversity Institute, Pretoria, pp. 249–250.

    Bauer, A.M., Marais, J., Masterson, G. & Harvey, J. (2014) Family Scincidae. In: Bates, M.F., Branch, W.R., Bauer, A.M., Burger, M., Marais, J., Alexander, G.J. & De Villiers, M.S. (Eds.), Atlas and Red List of the Reptiles of South Africa, Lesotho and Swaziland. Suricata 1. South African National Biodiversity Institute, Pretoria, pp. 237–238.

    Branch, W.R. (1998) Field guide to snakes and other reptiles of southern Africa. 3rd Edition. Struik Publishers, Cape Town, 399 pp. [pp. 135–136]

    Brandley, M.C., Schmitz, A. & Reeder, T.W. (2005) Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology, 54 (3), 373–390.
    https://doi.org/10.1080/10635150590946808

    Broadley, D.G. (1968) A revision of the African genus Typhlosaurus Wiegmann (Sauria: Scincidae). Arnoldia Rhodesia, 3, 1–20.

    Broadley, D.G. (1990) The herpetofaunas of the islands off the coast of South Mocambique. Arnoldia Zimbabwe, 9, 469–493.

    Broadley, D.G. (1992) Reptiles and amphibians from the Bazaruto archipelago, Mozambique. Arnoldia Zimbabwe, 9, 539–548.

    Bruton, M.N. & Haacke, W.D. (1980) The reptiles of Maputaland. In: Bruton, M.N. & Cooper, K.H. (Eds.), Studies on the Ecology of Maputaland. Rhodes University, Grahamstown, pp. 251–287.

    Castoe, T.A., Doan, T.M. & Parkinson, C.L. (2004) Data partitions and complex models in Bayesian analysis: The phylogeny of gymnophthalmid lizards. Systematic Biology, 53, 448–469.
    https://doi.org/10.1080/10635150490445797

    Daniels, S.R., Mouton, P. le F.N. & Du Toit, D.A. (2004) Molecular data suggest that melanistic ectotherms at the south-western tip of Africa are the products of Miocene climatic events: Evidence from cordylid lizards. Journal of Zoology, 263 (4), 373–383.
    https://doi.org/10.1017/S0952836904005424

    De Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56 (6), 879–886.

    https://doi.org/10.1080/10635150701701083

    Engelbrecht, H.M., Mouton, P. le F.N. & Daniels, S.R. (2011) Are melanistic populations of the Karoo girdled lizard, Karusasaurus polyzonus, relics or ecotypes? A molecular investigation. African Zoology, 46 (1), 146–155.
    https://doi.org/10.1080/15627020.2012.11407487

    FitzSimons, V.F. (1943) The lizards of South Africa. Transvaal Museum memoir, No. 1, 24 pls., map, i–xv + 1–528.

    Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate Maximum Likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology, 59 (3), 307–321.
    https://doi.org/10.1093/sysbio/syq010

    Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17 (8), 754–755.
    https://doi.org/10.1093/bioinformatics/17.8.754

    Jacobsen, N.H.G. (1987) A new subspecies of Typhlosaurus lineatus Boulenger 1887 (Reptilia: Scincidae) from Venda, southern Africa. South African Journal of Zoology, 22 (4), 318–320.
    https://doi.org/10.1080/02541858.1987.11448064

    Jacobsen, N.H.G. (1989) A herpetological survey of the Transvaal. Unpublished report, Transvaal Chief Directorate: Nature & Environmental Conservation, Transvaal Provincial Administration, University of Natal, Durban, 1621 pp.

    Jacobsen, N.H.G., Pietersen, E.W. & Pietersen, D.W. (2010) A preliminary herpetological survey of the Vilanculos Coastal Wildlife Sanctuary on the San Sebastian Peninsula, Vilankulo, Mozambique. Herpetology Notes, 3, 181–193.

    Janse van Rensburg, D.A., Mouton, P. le F.N. & Van Niekerk, A. (2009) Why cordylid lizards are black at the south‐western tip of Africa. Journal of Zoology, 278 (4), 333–341.
    https://doi.org/10.1111/j.1469-7998.2009.00581.x

    Lamb, T., Biswas, S. & Bauer, A.M. (2010) A phylogenetic reassessment of African fossorial skinks in the subfamily Acontinae (Squamata: Scincidae): Evidence for parallelism and polyphyly. Zootaxa, 2657 (1), 33–46.

    Lefort, V., Longueville, J.E. & Gascuel, O. (2017) SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34 (9), 2422–2424.
    https://doi.org/10.1093/molbev/msx149

    Markoulatos, P., Siafakas, N. & Moncany, M. (2002) Multiplex polymerase chain reaction: A practical approach. Journal of Clinical Laboratory Analysis, 16 (1), 47–51.
    https://doi.org/10.1002/jcla.2058

    McGuire, J.A., Witt, C.C., Altshuler, D.L. & Remsen, J.V. (2007) Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology, 56, 837–856.
    https://doi.org/10.1080/10635150701656360

    Mouton, P. le F.N., Nieuwoudt, C.J., Badenhorst, N.C. & Flemming, A.F. (2002) Melanistic Cordylus polyzonus (Sauria: Cordylidae) populations in the Western Cape, South Africa: Relics or Ecotypes? Journal of Herpetology, 36 (3), 526–531.
    https://doi.org/10.2307/1566204

    Peters, W.C.H. (1882) Naturwissenschaftliche reise nach Mossambique auf befehl seiner majestät des Königs Friedrich Wilhelm IV in den jahren 1842 bis 1848 ausgeführt. Volume 3. G. Reimer, Berlin, pp. 83–84.

    Pienaar, U. De V. (1978) The reptiles of the Kruger National Park. National Parks Board of Trustees of the Republic of South Africa, Pretoria, 65–67.

    Pietersen, D. (2007) Possible stress-related colour changes in fossorial reptile species. African Herp News, 43, 2–10.

    Rambaut, A. (2014) FigTree: Tree figure drawing tool. Institute of evolutionary biology, University of Edinburgh. Available from: http://tree.bio.ed.ac.uk/ (accessed 15 August 2017)

    Rambaut, A., Suchard, M.A., Xie, W. & Drummond, A.J. (2013) Tracer: MCMC Trace Analysis Tool. Institute of Evolutionary Biology, University of Edinburgh. Available from: http://tree.bio.ed.ac.uk/software/tracer/ (accessed 15 August 2017)

    Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19 (12), 1572–1574.
    https://doi.org/10.1093/bioinformatics/btg180

    Schneider, V. & Bauer, A.M. (2009) Typhlosaurus jappi Broadley, 1968, a valid species of acontine skink. African Journal of Herpetology, 58, 56–58.
    https://doi.org/10.1080/21564574.2009.9635582

    Sukumaran, J. & Knowles, L.L. (2017) Multispecies coalescent delimits structure, not species. Proceedings of the National Academy of Sciences, 114 (7), 1607–1612.
    https://doi.org/10.1073/pnas.1607921114

    Tamura, K., Stecher, G., Peterson, D. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30 (12), 2725–2729.
    https://doi.org/10.1093/molbev/mst197

    Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.
    https://doi.org/10.1093/nar/22.22.4673

    Townsend, T.M., Larson, A., Louis, E. & Macey, J.R. (2004) Molecular phylogenetics of Squamata: The position of snakes, amphisbaenians and dibamids, and the root of the squamate tree. Systematic Biology, 53 (5), 735–757.
    https://doi.org/10.1080/10635150490522340

    Trullas, S.C., van Wyk, J.H. & Spotila, J.R. (2007) Thermal melanism in ectotherms. Journal of Thermal Biology, 32 (5), 235–245.
    https://doi.org/10.1016/j.jtherbio.2007.01.013