Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2019-09-24
Page range: 225–234
Abstract views: 87
PDF downloaded: 2

Morphological description and DNA barcoding of Hydrobaenus laticaudus Sæther, 1976 (Diptera: Chironomidae: Orthocladiinae) from Amur River basin (Russian Far East)

Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch of the Russian Academy of Sciences, 100 let Vladivostoku 159, 690022 Vladivostok, Russia
Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch of the Russian Academy of Sciences, 100 let Vladivostoku 159, 690022 Vladivostok, Russia
Far Eastern Federal University, Suhanova St. 8, 690950 Vladivostok, Russia
Diptera Chironomidae Hydrobaenus taxonomy DNA barcoding Russian Far East

Abstract

Illustrated redescription of adult male and description for the first time of pupa and fourth instar larva, as well as DNA barcoding, of Hydrobaenus laticaudus Sæther in comparison with close related known species of Hydrobaenus Fries, and an updated part of a key to species of Hydrobaenus from the Russian Far East are provided. A reference 658 bp barcode sequence from a fragment of the mitochondrial gene cytochrome oxidase I (COI) was used as a tool for species delimitation. For the estimation of interspecific distances and constructing detailed Bayesian tree within Hydrobaenus, we have obtained DNA barcoding for the two other species, H. distinctus and Hydrobaenus sp.1. The intraspecific sequence divergence of H. laticaudus based on the Kimura-2-parameter (K2P) distance ranged from 0.0–0.031, whereas the interspecific sequence divergence based on the K2P distance ranged from 0.106-0.197% between H. laticaudus and other species of genus Hydrobaenus. The well-supported monophyly as well as results of an ABGD analysis confirms the validity of H. laticaudus.

 

References

  1. Ashe, P. & O’Connor, J.P. (2012) A World Catalogue of Chironomidae (Diptera) Part 2. Orthocladiinae. Irish Biogeographical Society & National Museum of Ireland, Dublin. 500 pp. [pp. 469–968]

    Cranston, P.S., Hardy, N.B. & Morse, G.E. (2012) A dated molecular phylogeny for the Chironomidae (Diptera). Systematic Entomology, 37, 172–188.

    https://doi.org/10.1111/j.1365-3113.2011.00603.x

    Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797.

    https://doi.org/10.1093/nar/gkh340

    Ekrem, T., Stur, E. & Hebert, P.D.N. (2010) Females do count: Documenting Chironomidae (Diptera) species diversity using DNA barcoding. Organisms Diversity Evolution, 10, 397.

    https://doi.org/10.1007/s13127-010-0034-y

    Ekrem, T., Stur, E., Orton, M.G. & Adamowicz, S.J. (2018) DNA barcode data reveal biogeographic trends in Arctic non-biting midges. Genome, 61 (11), 787–796.

    https://doi.org/10.1139/gen-2018-0100

    Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17 (6), 368–376.

    https://doi.org/10.1007/BF01734359

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    Hebert, P., Cywinska, A., Ball, S. & DeWaard, J. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, B: Biological Sciences, 270, 313–321.

    https://doi.org/10.1098/rspb.2002.2218

    Hebert, P.D.N., Ratnasingham, S., Zakharov E.V., Telfer, A.C., Levesque., B.V., Milton, M.A., Pedersen, S., Jannetta, P. & deWaard, J.R. (2016) Counting animal species with DNA barcodes: Canadian insects. Philosophical Transactions of The Royal Society, B: Biological Sciences, 371, 1–10.

    https://doi.org/10.1098/rstb.2015.0333

    Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33 (7), 1870–1874.

    https://doi.org/10.1093/molbev/msw054

    Lanfear, R., Calcott, B., Ho, S.Y. & Guindon, S. (2012) Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29 (6), 1695–1701.

    https://doi.org/10.1093/molbev/mss020

    Makarchenko, E.A. (1985) Chironomids of the Soviet Far East. Subfamilies Podonominae, Diamesinae and Prodiamesinae (Diptera, Chironomidae). DVNC AN SSSR Press, Vladivostok, 208 pp. [in Russian]

    Makarchenko, E.A., Makarchenko, M.A. & Yavorskaya, N.M. (2009) New records of chironomids (Diptera, Chironomidae, Orthocladiinae) in Far East and bordering territories. VI. Hydrobaenus Fries. Euroasian Entomological Journal, 8 (Supplement 1), 33–50. [in Russian]

    Makarchenko, E.A. & Makarchenko, M.A. (2014) On taxonomy of Hydrobaenus Fries, 1830 (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East, with a key to species. Zootaxa, 3760 (3), 429–438.

    https://doi.org/10.11646/zootaxa.3760.3.9

    Makarchenko, E.A., Makarchenko, M.A. & Semenchenko, A.A. (2015) Morphological description and DNA barcoding of Hydrobaenus majus sp. nov. (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East. Zootaxa, 4000 (2), 287–293. https://doi.org/10.11646/zootaxa.4000.2.7

    Makarchenko, E.A., Makarchenko, M.A. & Semenchenko, A.A. (2017a) New or little-known species of Chaetocladius s. str. Kieffer, 1911 (Diptera: Chironomidae: Orthocladiinae) from the Amur River basin (Russian Far East). Zootaxa, 4247 (3), 313–330.

    https://doi.org/10.11646/zootaxa.4247.3.5

    Makarchenko, E.A., Makarchenko, M.A., Semenchenko, A.A. & Veliaev, O.A. (2017b) Morphological description and DNA barcoding of Hydrobaenus golovinensis sp. nov. (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East.
    Zootaxa, 4286 (2), 277–284.

    https://doi.org/10.11646/zootaxa.4286.2.10

    Montagna, M., Mereghetti, V., Lencioni, V. & Rossaro, B. (2016) Integrated Taxonomy and DNA Barcoding of Alpine Midges (Diptera: Chironomidae). PLoS ONE, 11 (3), e0149673.

    https://doi.org/10.1371/journal.pone.0149673

    Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21 (8), 1864–1877.

    https://doi.org/10.1111/j.1365-294X.2011.05239.x

    Rambaut, A, Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67 (5), 901–904.

    https://doi.org/10.1093/sysbio/syy032

    Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574. https://doi.org/10.1093/bioinformatics/btg180

    Sæther, O.A. (1976) Revision of Hydrobaenus, Trissocladius, Zalutschia, Paratrissocladius, and some related genera (Diptera, Chironomidae). Bulletin of the Fisheries Research Board of Canada, 195, 1–287.

    Sæther, O.A. (1980) Glossary of chironomid morphology terminology (Chironomidae, Diptera). Entomologica scandinavica, 14 (Supplement), 1–51.

    Silva, F.L. & Wiedenbrug, S. (2014) Integrating DNA barcodes and morphology for species delimitation in the Corynoneura group (Diptera: Chironomidae: Orthocladiinae). Bulletin of Entomological Research, 104 (1), 65–78.

    https://doi.org/10.1017/S0007485313000515

    Song, C., Lin, X.-L., Wang, Q. & Wang, X.-H. (2018) DNA barcodes successfully delimit morphospecies in a superdiverse insect genus. Zoologica Scripta, 47 (3), 311–324.

    https://doi.org/10.1111/zsc.12284

    Tavaré, S. (1986) Some Probabilistic and Statistical Problems in the Analysis of DNA Sequences (PDF). Lectures on Mathematics in the Life Sciences. American Mathematical Society, 17, 57–86.

    Wirta, H., Varkonyi, G., Rasmussen, C., Kaartinen, R., Schmidt, N.M., Hebert, P.D.N., Bartak, M., Blagoev, G., Disney, H., Ertl, S., Gjelstrup, P., Gwiazdowicz, D.J., Hulden, L., Ilmonen, J., Jakovlev, J., Jaschhof, M., Kahanpaa, J., Kankaanpaa, T., Krogh, P.H., Labbee, R., Lettner, C., Michelsen, V., Nielsen, S.A., Nielsen, T.R., Paasivirta, L., Pedersen, S., Pohjoismaki, J., Salmela, J., Vilkamaa, P., Vare, H., von Tschirnhaus, M. & Roslin, T. (2016) Establishing a community-wide DNA barcode library as a new tool for arctic research. Molecular ecology resources, 16, 809–822.

    https://doi.org/10.1111/1755-0998.12489

    Zharkikh, A.J. (1994) Estimation of evolutionary distances between nucleotide sequences. Molecular Evolution, 39, 315.

    https://doi.org/10.1007/BF00160155