Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2019-11-11
Page range: 367–377
Abstract views: 218
PDF downloaded: 170

First record of Larsonella pumilus (Teleostei: Gobiidae) from Japan, with phylogenetic placement of the genus Larsonella

Okinawa Churashima Foundation Research Center, 888 Ishikawa, Motobu-cho, Okinawa 905-0206, Japan.
Okinawa Churaumi Aquarium, 424 Ishikawa, Motobu-cho, Okinawa 905-0206, Japan.
Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba 277-8564, Japan
Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1 Tancha, Onna, Okinawa 904-0495, Japan
Pisces goby deep sea mitochondrial genome Ryukyu Archipelago

Abstract

During a survey of deep-sea fauna, using a Remotely Operated Vehicle, a single specimen (21.6 mm in standard length) of Larsonella pumilus (Larson & Hoese, 1980) was collected at a depth of 214 m off the coast of Okinawa Island, Japan. It represents the first record of this species from Japan. The collection site was far deeper than previous reports for this species. This suggests that the main habitat of L. pumilus is deeper than previously recognized and it may explain the paucity of records of this species. As the previously available morphological description of L. pumilus was based on only a single specimen (holotype), this new specimen is described herein. Its morphology corresponds closely to the original description of the holotype, except that faint melanophores are arranged radially around the eyes and scattered on the trunk and the fins. Mitochondrial genome sequences of L. pumilus and 19 related species demonstrate close relationships between L. pumilus and the genus Priolepis. These data also indicate that the genus Priolepis is not monophyletic.

 

References

  1. Agorreta, A., San Mauro, D., Schliewen, U., Van Tassell, J.L., Kovačić, M., Zardoya, R. & Ruber, L. (2013) Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution, 69, 619–633.

    https://doi.org/10.1016/j.ympev.2013.07.017

    Allen, G.R. & Erdmann, M.V. (2016) Lubricogobius tunicatus, a new species of goby (Pisces: Gobiidae) from Papua New Guinea and the first record of L. ornatus from the East Indies. Journal of the Ocean Science Foundation, 24, 24–34.

    Baldwin, C.C., Tornabene, L. & Robertson, D.R. (2018) Below the Mesophotic. Scientific Reports, 8, 4920.

    https://doi.org/10.1038/s41598-018-23067-1

    Birdsong, R.S., Murdy, E.O. & Pezold, F.L. (1988) A study of the vertebral column and median fin osteology in gobioid fishes with comments on gobioid relationships. Bulletin of Marine Science, 42, 174–214.

    Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25, 1972–1973.

    https://doi.org/10.1093/bioinformatics/btp348

    Bianchi, G., Carpenter, K.E., Roux, J.-P., Molloy, F.J., Boyer, D. & Boyer, H.J. (Eds.) (1999) FAO Species Identification Field Guide for Fishery Purposes. The Living Marine Resources of Namibia. FAO, Rome, 256 pp.

    Darriba, D., Posada, D., Kozlov, A.M., Stamatakis, A., Morel, B. & Flouri, T. (2019) ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution, msz189. [published]

    https://doi.org/10.1093/molbev/msz189

    Eschmeyer, W.N. & Herald, E.S. (1983) A field guide to Pacific Coast fishes of North America from the Gulf of Alaska to Baja California. Houghton Mifflin Company, Boston, 336 pp.

    Fricke, R., Eschmeyer, W.N. & van der Laan, R. (Eds.) (2018) Catalog of fishes: genera, species, references. Available from: http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp (accessed 19 September 2018)

    Froese, R. & Pauly, D. (Eds.) (2018) FishBase. World Wide Web electronic publication. Version (06/2018). Available from: http://www.fishbase.org (accessed 19 September 2018)

    GBIF Secretariat (2017) GBIF Backbone Taxonomy. Checklist dataset. Available from: https://doi.org/10.15468/39omei (accessed 30 August 2018)

    Goren, M. (1992) Obliquogobius turkayi, a new species of gobiid fish from the deep water of the central Red Sea. Senckenbergiana Maritima, 22 (3/6), 265–270.

    Goren, M. & Baranes, A. (1995) Priolepis goldshmidtae (Gobiidae), a new species from the deep water of the northern Gulf of Aqaba, Red Sea. Cybium, 19, 343­­–347.

    Greenfield, D.W. (2002) Palatogobius grandoculus: a new deep-water western Caribbean goby (Teleostei: Gobiidae). Copeia, 2002, 716­–718.

    https://doi.org/10.1643/0045-8511(2002)002[0716:PGANDW]2.0.CO;2

    Hoese, D.F. & Larson, H.K. (2006) Gobiidae. In: Beesley P.L. & Wells A. (Eds.), Zoological catalogue of Australia. Vol. 35. ABRS and CSIRO Publishing, Canberra, pp. 1612–1697.

    Hoese, D.F. & Larson, H.K. (2010) Description of two new species of the genus Priolepis from the Indo-Pacific with redescription of Priolepis profunda and Priolepis psygmophilia. Ichthyological Research, 57, 373–388.

    https://doi.org/10.1007/s10228-010-0170-6

    Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.

    https://doi.org/10.1093/molbev/mst010

    Larson, H.K. & Hoese, D.F. (1980) Fische des Indischen Ozeans. Ergebnisse der ichthyologischen Untersuchungen während der Expedition des Forschungsschiffes “Meteor” in den Indischen Ozean, Oktober 1964 bis Mai 1965. A. Systematischer Teil, XXIII. Gobiidae. Meteor Forschungsergebnisse, Reihe D, Biologie, 32, 33–43.

    Larson, H.K. & Murdy, E.O. (2001) Families Eleotridae, Gobiidae. In: Carpenter, K.E. & Niem, V.H. (Eds.), Species identification guide for fishery purposes. The living marine resources of the western central Pacific. Vol. 6. Bony fishes part 4 (Labridae to Latimeriidae), estuarine crocodiles, sea turtles, sea snakes and marine mammals. FAO, Rome, pp. 3574­­­­­­–3603.

    Murdy, E.O. (2002) Karsten: a new genus of eel goby (Gobiidae: Amblyopinae) with a key to “Trypauchen” group genera. Copeia, 2002, 787–791.

    https://doi.org/10.1643/0045-8511(2002)002[0787:KANGOE]2.0.CO;2

    Mytilineou, C., Politou, C.-Y., Papaconstantinou, C., Kavadas, S., D’Onghia, G. & Sion, L. (2005) Deep-water fish fauna in the Eastern Ionian Sea. Belgian Journal of Zoology, 135, 229–233.

    Nakabo, T. (2002) Fishes of Japan with pictorial keys to the species. English Edition. Tokai University Press, Tokyo, 1749 pp.

    Nelson, J.S. (2006) Fishes of the world, fourth edition. John Wiley & Sons, Inc., Hoboken, 601 pp.

    Nelson, J.S., Grande, T.C. & Wilson, M.V.H. (2016) Fishes of the world. 5th Edition. John Wiley & Sons, Inc., Hoboken, 707 pp.

    https://doi.org/10.1002/9781119174844

    Patzner, R.A., van Tassell, J.L., Kovačić, M. & Kapoor, B.G. (2011) The biology of gobies. Science Publishers, New Hampshire, 685 pp.

    https://doi.org/10.1201/b11397

    Peng, Y., Leung, H.C., Yiu, S.M. & Chin, F.Y. (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics, 28, 1420–1428.

    https://doi.org/10.1093/bioinformatics/bts174

    Randall, J.E. & van Egmond, J. (1994) Marine fishes from the Seychelles: 108 new records. Zoologische Verhandelingen Leiden, 297, 43–83.

    Randall, J.E. & Senou, H. (2001) Review of the Indo-Pacific gobiid fish genus Lubricogobius, with description of a new species and a new genus for L. pumilus. Ichthyological Research, 48, 3–12.

    https://doi.org/10.1007/s10228-001-8111-z

    Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542.

    https://doi.org/10.1093/sysbio/sys029

    Sauberer, M., Iwamoto, T. & Ahnelt, H. (2018) Two new deep-water species of the genus Thorogobius (Teleostei: Gobiidae) from the upper continental slope of the Eastern Central Atlantic. Zootaxa, 4429 (2), 357–371.

    https://doi.org/10.11646/zootaxa.4429.2.10

    Sabaj, M.H. (2016) Standard symbolic codes for institutional resource collections in herpetology and ichthyology: an Online Reference. Version 6.5. American Society of Ichthyologists and Herpetologists, Washington, D.C. Available from: http://asih.org/standard-symbolic-codes/about-symbolic-codes (accessed 30 August 2018)

    Shibukawa, K. & Aonuma, Y. (2007) Three new species of the deep-dwelling goby genus Obliquogobius (Teleostei: Gobiidae: Gobiinae) from Japan, with comments on the limits of the genus. Bulletin of the National Science Museum Series A (Zoology) Supplent1, 137–142.

    Shinohara, G., Endo, H., Matsuura, K., Machida, Y. & Honda, H. (2001) Annotated checklist of the deepwater fishes from Fishes from Tosa Bay, Japan. National Science Museum Monographs, 20, 283–343.

    Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313.

    https://doi.org/10.1093/bioinformatics/btu033

    Thacker, C.E. (2015) Biogeography of goby lineages (Gobiiformes: Gobioidei): origin, invasions and extinction throughout the Cenozoic. Journal of Biogeography, 42, 1615–1625.

    https://doi.org/10.1111/jbi.12545

    Thacker, C.E. & Roje, D.M. (2011) Phylogeny of Gobiidae and identification of gobiid lineages. Systematics and Biodiversity, 9, 329–347.

    https://doi.org/10.1080/14772000.2011.629011

    Tornabene, L., Van Tassell, J.L., Gilmore, R.G., Robertson, D.R., Young, F. & Baldwin, C.C. (2016) Molecular phylogeny, analysis of character evolution, and submersible collections enable a new classification for a diverse group of gobies (Teleostei: Gobiidae: Nes subgroup), including nine new species and four new genera. Zoological Journal of the Linnean Society, 177, 764–812.

    https://doi.org/10.1111/zoj.12394