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Type: Article
Published: 2022-09-30
Page range: 565-574
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DNA barcode data confirm the placement of subterranean Noemacheilus (Troglocobitis) starostini Parin 1983 in the genus Paracobitis (Teleostei, Nemacheilidae)

Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, 10115 Berlin, Germany.
Museum Koenig Bonn, Leibniz Institute for the Analysis of Biodiversity Change, Adenauerallee 160, 53113 Bonn, Germany.
Institute of Zoology, Zoological Society of London, Regents Park, London NW1 4RY, United Kingdom.
Bristol Zoological Society, Clifton, Bristol, BS8 3HA, United Kingdom.
Pisces Freshwater fish Taxonomy Cytochrome oxidase I Middle East

Abstract

DNA barcodes (COI) of Troglocobitis starostini, endemic to a single site in Turkmenistan, were analysed and put into the taxonomic context of the large group of nemacheilid loaches known from Western and Central Asia. All applied phylogenetic tree-based analyses place the species into the genus Paracobitis. This finding supports previous morphological studies. While the exact position of Troglocobitis starostini within Paracobitis was not resolved unambiguously, it was constantly recovered within Paracobitis, irrespective of the tree reconstruction method applied. With a minimum interspecific K2P distance of 7.19% P. persa was the closest hit in our dataset, which comprised a total of ten species of Paracobitis, which showed an average interspecific K2P distance of 5.43% (range 2.78–9.44%).

 

References

  1. Bănărescu, P.G. & Nalbant., T.T. (1966) The 3rd Danish Expedition to Central Asia. Zoological results 34. Cobitidae (Pisces) from Afghanistan and Iran. Videnskabelige Meddelelser fra Dansk Naturhistorisk Forening i København, 129, 149–186.
    Behrmann-Godel, J., Nolte, A.W., Kreiselmaier, J., Berka, R. & Freyhof, J. (2017) The first European cave fish. Current Biology, 27, R243–R258.
    Biomatters (2013) Geneious Pro. Available from: http://www.geneious.com (accessed 15 August 2018)
    Chen, W., Ma, X., Shen, Y., Mao, Y. & He, S. (2015) The fish diversity in the upper reaches of the Salween River, Nujiang River, revealed by DNA barcoding. Scientific Reports, 5, 17437. https://doi.org/10.1038/srep17437
    Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic acids research, 32, 1792–1797. https://doi.org/10.1093/nar/gkh340
    Esmaeili, H.R., Sayyadzadeh, G., Özuluð, M., Geiger, M. & Freyhof, J. (2014) Three new species of Turcinoemacheilus from Iran and Turkey (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 24, 257–273.
    Freyhof, J., Erk’akan, F., Özeren, C. & Perdices, A.J. (2011) An overview of the western Palaearctic loach genus Oxynoemacheilus (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 22, 301–312.
    Freyhof, J., Abdullah, Y.S., Ararat, K., Ibrahim, H. & Geiger, M.F. (2016) Eidinemacheilus proudlovei, a new subterranean loach from Iraqi Kurdistan (Teleostei; Nemacheilidae). Zootaxa, 4173 (3), 225–236. https://doi.org/10.11646/zootaxa.4173.3.2
    Freyhof, J., Sayyadzadeh, G., Esmaeili, H.R. & Geiger, M. (2015) Review of the genus Paraschistura from Iran with description of six new species (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 26, 1–48.
    Freyhof, J., Esmaeili, H.R., Sayyadzadeh, G. & Geiger, M. (2014) Review of the crested loaches of the genus Paracobitis from Iran and Iraq with the description of four new species (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 25 (1), 11–38.
    Freyhof, J., Geiger, M.F., Golzarianpour, K. & Patimar, R. (2016) Sasanidus, a new generic name for Noemacheilus kermanshahensis Bǎnǎrescu & Nalbant, with discussion of Ilamnemacheilus and Schistura (Teleostei; Nemacheilidae). Zootaxa, 4107 (1), 65–80. https://doi.org/10.11646/zootaxa.4107.1.3
    Geiger, M.F., Herder, F., Monaghan, M.T., Almada, V., Barbieri, R., Bariche, M., Berrebi, P., Bohlen, J., Casal-Lopez, M., Delmastro, G.B., Denys, G.P.J., Dettai, A., Doadrio, I., Kalogianni, E., Kärst, H., Kottelat, M., Kovačić, M., Laporte, M., Lorenzoni, M., Marčić, Z., Özuluð, M., Perdices, A., Perea, S., Persat, H., Porcelotti, S., Puzzi, C., Robalo, J., Šanda, R., Schneider, M., Šlechtová, V., Stoumboudi, M., Walter, S. & Freyhof, J. (2014), Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes. Molecular Ecology Resources, 14: 1210–1221. https://doi.org/10.1111/1755-0998.12257
    Hamidan, N.A., Geiger, M. & Freyhof, J. (2014) Garra jordanica, a new species from the Dead Sea basin with remarks on the relationship of G. ghorensis, G. tibanica and G. rufa (Teleostei: Cyprinidae). Ichthyological Exploration of Freshwaters, 25, 223–236.
    Hashemzadeh Segherloo, I.H., Ghaedrahmati, N. & Freyhof, J. (2016) Eidinemacheilus, a new generic name for Noemacheilus smithi Greenwood (Teleostei; Nemacheilidae). Zootaxa, 4147 (4), 466–476. https://doi.org/ 10.11646/zootaxa.4147.4.7
    Ivanova, N.V., Zemlak, T.S., Hanner, R.H. & Hebert, P.D.N. (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7, 544–548. https://doi.org/10.1111/j.1471-8286.2007.01748.x
    Kaya, C., Turan, D., Kalayci, G, Bayçelebi, E. & Freyhof, J. (2020) The westernmost known population of Paracobitis (Teleostei, Nemacheilidae), with the description of a new species from the Euphrates River in southern Anatolia. Zootaxa, 4838 (4), 525–534. https://doi.org/10.11646/zootaxa.4838.4.6
    Keene, A.C., Yoshizawa, M. & McGaugh, S. (2015) Biology and evolution of the Mexican cave fish. Academic Press, Elsevier, Waltham, Massachusetts, 412 pp.
    Kottelat, M. (1987) Nomenclatural status of the fish names created by J. C.van Hasselt (1823) and of some cobitoid genera. Ichthyological Research, 33 (4), 368–375. https://doi.org/10.1007/BF02904097
    Kottelat, M. (1990) Indochinese nemacheilines. A revision of nemacheiline loaches (Pisces: Cypriniformes) of Thailand, Burma, Laos, Cambodia and southern Viet Nam. Verlag Dr. Friedrich Pfeil, München, 262 pp.
    Kottelat, M. (2012) Conspectus cobitidum: an inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei). The Raffles Bulletin of Zoology, Supplement, 26, 1–199.
    Kruckenhauser, L., Haring, E., Seemann, R. & Sattmann, H. (2011) Genetic differentiation between cave and surface dwelling populations of Garra barreimiae (Cyprinidae) in Oman. BMC Evolutionary Biology, 11, 172–186. https://doi.org/10.1186/1471-2148-11-172
    Kumar, S., Stecher, G., Li, M., Kýnyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096
    Mao, T.R., Liu, Y.‑W., Meegaskumbura, M., Yang, J., Ellepola, G., Senevirathne, G., Fu, C.‑H., Gross, J.B. & Pie, M.R. (2021) Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals, and origin of novel traits. BMC Ecology and Evolution, 21, 45. https://doi.org/10.1186/s12862-021-01776-y
    Masters, B.C., Fan, V. & Ross, H.A. (2011) Species delimitation—a geneious plugin for the exploration of species boundaries. Molecular Ecology Resources, 11, 154–157. https://doi.org/10.1111/j.1755-0998.2010.02896.x
    Meier R, Shiyang, K., Vaidya, G. & Ng, P.K.L. (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology, 55, 715–728. https://doi.org/10.1080/10635150600969864
    Mousavi-Sabet, H., Vatandoust, S., Fatemi, Y. & Eagderi, S. (2016) Tashan Cave a new cave fish locality for Iran; and Garra tashanensis, a new blind species from the Tigris River drainage (Teleostei: Cyprinidae). FishTaxa, 1, 133–148.
    Mousavi-Sabet, H., Vatandoust, S., Geiger, M.F. & Freyhof, J. (2019) Paracobitis abrishamchiani, a new crested loach from the southern Caspian Sea basin (Teleostei: Nemacheilidae). Zootaxa, 4545 (3), 375–388. https://doi.org/10.11646/zootaxa.4545.3.3
    Nalbant, T.T. & Linares, O. (1987) A study of a subterranean population of Trichomycterus guianense (Eigenmann, 1909) from Venezuela (Pisces, Siluriformes, Trichomycteridae). In: Decu, V., Orghidan, T., Dancau, D. & Bordon, C. (Eds.), Fauna Hipogea y Semiedafica de Venezuela y de Otros Paises de America del Sur. Editura Academiei Republicii Socialiste Romania, Bucaresti, pp. 211–217.
    Nguyen, D.T., Wu, H, Cao, L. & Zhang, E. (2021) Homatula dotui, a new cave loach from Central Vietnam (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 31 (1), 21–31.
    Parin, N.V. (1983) Noemacheilus (Troglocobitis) starostini sp. n. (Osteichthyes, Gobitidae), un nouveau poisson aveugle des eaux souterraines de Kugitang-Tau (Turkménie). Zoologicheskii Zhurnal, 62 (1), 83–89. [in Russian]
    Prokofiev, A.M. (2009) Problems of the Classification and Phylogeny of Nemacheiline Loaches of the Group Lacking the Preethmoid I (Cypriniformes: Balitoridae: Nemacheilinae) Journal of Ichthyology, 49 (10), 874–898.
    Proudlove, G.S. (2006) Subterranean fishes of the World. An account of the subterranean (hypogean) fishes described up to 2003 with a bibliography 1541–2004. International Society for Subterranean Biology, Moulis. [unknkown pagination]
    Romero, A. & Paulson K.M. (2001) It‘s a wonderful hypogean life: a guide to the troglomorphic fishes of the world. Environmental Biology of Fishes, 62, 13–41.
    Saitou, N. & Nei, M. (1987) The Neighbor-Joining Method—a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
    Sayyadzadeha, G., Esmaeili, H.R. & Eagderi, S. (2019) Taxonomic status of the loaches Paracobitis vignai and P. rhadinaea (Teleostei: Nemacheilidae) in Iran. Zoology in the Middle East, 65 (3), 221–229. https://doi.org/10.1080/09397140.2019.1586143
    Sheraliev, B. & Kayumova, Y. (2022) Issues of taxonomic status and conservation of loach species (Teleostei: Cobitoidei) in inland waters of Uzbekistan. Uzbek Biological Journal, 2, 35–40. [in Russian]
    Sheraliev, B. & Peng, Z. (2021) Molecular diversity of Uzbekistan’s fishes assessed with DNA barcoding. Scientific Reports, 11, 16894. https://doi.org/10.1038/s41598-021-96487-1
    Swofford, D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts. [program]
    Tadmor-Levi, R., Borovski, T., Marcos-Hadad, E., Shapiro, J., Hulata, G., Golani, D. & David, L. (2022) Establishing and using a genetic database for resolving identification of fish species in the Sea of Galilee, Israel. PLoS ONE, 17 (5), e0267021. https://doi.org/10.1371/journal.pone.0267021
    Welch, G. & Stoev, P. (2019) A report of RSPB-supported scientific research at Koytendag State Nature Reserve, East Turkmenistan. Pensoft Publishers, Sofia, 88 pp.
    Yoðurtçuoðlu, B., Kaya, C., Geiger, M.F. & Freyhof, J. (2020) Revision of the genus Seminemacheilus, with the description of three new species (Teleostei: Nemacheilidae). Zootaxa, 4802 (3), 477–501. https://doi.org/10.11646/zootaxa.4802.3.5
    Zimmerman, B., Jones, R. & Ball, S. (2019) Fish. In: A report of RSPB-supported scientific research at Koytendag State Nature Reserve, East Turkmenistan. Pensoft Publishers, Sofia, pp. 42–58.

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