Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2022-12-07
Page range: 72-82
Abstract views: 316
PDF downloaded: 49

Genetic variation among populations of, and evidence of deep divergence within, the Rio Grande Chirping Frog, Eleutherodactylus campi (Anura: Eleutherodactylidae)

Department of Biological Sciences and Chemistry, Southern University and Agricultural & Mechanical College, 801 Harding Blvd, Baton Rouge, LA 70807, USA,
2032 Mohawk Dr., Lake Charles, LA 70611,
3Division of Arts and Sciences, Louisiana State University Eunice, 2048 Johnson Hwy, Eunice, LA 70535, USA,
41320 Merchant Road, Kaplan, LA 70548, USA,
288 Charlie Arceneaux Road, Rayne LA 70578, USA,
1616 South Barnett Springs Street, Ruston, LA 71270, USA
Amphibia genetic divergence haplotype monophyletic phylogeographic clades 16S ribosomal RNA gene taxonomy

Abstract

Herein we report the first molecular assessment of intra-species genetic variation and interrelationships within the Rio Grande Chirping frog, Eleutherodactylus campi. We analyzed 548 base pairs of 16S rRNA gene for 71 ingroup individuals belonging to the genus Eleutherodactylus (including 42 E. campi sampled from 15 localities in the United States and Mexico) and four outgroup samples. By unveiling two highly divergent and geographically structured clades within E. campi this study provides a novel phylogenetic placement of E. campi populations north and south of the Rio Grande Valley as sister groups to each other. The observed level of genetic divergence between these two clades (5.8%) is, on average, comparable to or greater than the levels of divergence found between several currently valid amphibian species pairs. Estimates of Time to Most Common Ancestor (TMRCA) indicate that the phylogeographic split between the two E. campi clades may have occurred 7.6 MYA (i.e., late Miocene), consistent with the geologic history of southwestern North America. The study also confirms that south Texas served as the source population for populations of E. campi in its introduced range (i.e., Alabama, Louisiana, and Texas). Overall, this molecular study indicates that E. campi consists of two deeply divergent lineages corresponding to its populations north and south of Rio Grande Valley. These results suggest that the recovered lineages may represent independent species and thereby highlight the need for further research to clarify their status.

 

References

  1. Beck, J.W. & Dobbs, R.C. (2008) Geographic distribution. Eleutherodactylus cystignathoides. Herpetological Review, 39, 105.
    Bittencourt-Silva G. B., Conradie, W., Siu-Ting, K., Tolley, K, Channing, A., Cunningham, M., Farooq, H., Menegon, M. & Loader, S. (2016) The phylogenetic position and diversity of the enigmatic mongrel frog Nothophryne Poynton, 1963 (Amphibia, Anura). Molecular Phylogenetics and Evolution, 9, 89–102. https://doi.org/10.1016/j.ympev.2016.03.021
    Boundy, J. & Carr, J.L. (2017) Amphibians and reptiles of Louisiana: an identification and reference guide. Louisiana State University Press, Baton Rouge, Louisiana, 400 pp.
    Cape C.D., McGeary, S. & Thompson, G.A. (1983) Cenozoic normal faulting and the shallow structure of the Rio Grande rift near Socorro, New Mexico. Geological Society of America Bulletin, 94, 3–4. https://doi.org/10.1130/0016-7606(1983)94%3C3:CNFATS%3E2.0.CO;2
    Chapin, C.E. & Seager, W.R. (1975) Evolution of the Rio Grande rift in the Socorro and Las Cruces areas. New Mexico Geological Society Guidebook, 26, 297–321. https://doi.org/10.56577/FFC-26.297
    Crawford, A.J. &. Smith, E.N. (2005) Cenozoic biogeography and evolution in direct-developing frogs of Central America (Leptodactylidae: Eleutherodactylus) as inferred from a phylogenetic analysis of nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution, 35, 536–555. https://doi.org/10.1016/j.ympev.2005.03.006
    Dixon, J.R. (2013) Amphibians and reptiles of Texas: with keys, taxonomic synopsis, Bibliography and distribution maps. Texas A and M University Press, College Station, Texas, 432 pp.
    Fouquet, A., Gilles, A., Vences, M., Blanc, M. & Gemmell, N.J. (2007) Underestimation of species richness in Neotropical frogs revealed by mtDNA analyses. PLoS ONE, 2, e1109. https://doi.org/10.1371/journal.pone.0001109
    Grünwald, C.I., Reyes-Velasco, J., Franz-Chavez, H., Morales-Flores, K.I., Ahumada-Carrillo, I.T., Jones, J.M. & Boissinot, S. (2018) Six new species of Eleutherodactylus (Anura: Eleutherodactylidae: subgenus Syrrhophus) from Mexico, with a discussion of their systematic relationships and the validity of related species. Mesoamerican Herpetology, 5, 6–83.
    Hall, T.A. (1999) BioEdit; a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium, 41, 95–98.
    Hardy, L.M. (2004) Genus Syrrhophus (Anura: Leptodactylidae) in Louisiana. The Southern Naturalist, 49, 263–266. https://doi.org/10.1894/0038-4909(2004)049%3C0263:GSALIL%3E2.0.CO;2
    Hedges, S.B. (1989) Evolution and biogeography of West Indian frogs of the genus Eleutherodactylus: slow-evolving loci and the major groups. In: Woods, C.A. (Eds.), Biogeography of the West Indies: Past Present and Future. Sandhill Crane Press, Gainesville, Florida, pp. 305–370
    Hedges, S.B., Duekkman, W.E. & Heinicke, M.P. (2008) New World direct-developing frogs (Anura: Terrarana): Molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737 (1), 1–182. https://doi.org/10.11646/zootaxa.1737.1.1
    Heinicke, M.P., Duellman, W.E. & Hedges, S.B. (2007) Major Caribbean and Central American frog faunas originated by oceanic dispersal. Proceedings of the National Academy of Sciences, 104, 10092–10097. https://doi.org/10.1073/pnas.0611051104
    Hernandez-Austria, R., Garcia-Vazquez U.O., Grünwald, C.I. & Parra-Olea, G. (2022) Molecular phylogeny of the subgenus Syrrhophus (Amphibia: Anura: Eleutherodactylidae), with the description of a new species from Eastern Mexico. Systematics and Biodiversity, 20 (1), 1–20. https://doi.org/10.1080/14772000.2021.2014597
    Hillis, D.M., Frost, J.S. & Wright, D.A. (1983) Phylogeny and Biogeography of Rana Pipiens Complex: A biochemical evaluation. Systematic Zoology, 32 (2), 131–143. https://doi.org/10.2307/2413277
    Holman, J.A. (1968) Additional Miocene anurans from Florida. Quarterly Journal of the Florida Academy of Sciences, 30, 121–140.
    Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096
    Leigh, J.W. & Bryant, D. (2015) PopART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution, 6, 110–1116. https://doi.org/10.1111/2041-210X.12410
    Lott, T. (2019) The Little Frog That Could-The Diaspora of the Rio Grande Chirping Frog, Eleutherodactylus cystignathoides (Anura: Eleutherodactylidae) in the United States. Bulletin of the Chicago Herpetological Society, 54, 63–66.
    Lutterschmidt, W.I. & Thies, M.L. (1999) Geographic distribution. Syrrhophus cystignathoides. Herpetological Review, 30, 51.
    Lynch, J.D. (1970) A taxonomic revision of the leptodactylid frog genus Syrrhophus Cope 1877. Vol. 20. University of Kansas Publications, Lawrence, Kansas, 115 pp. https://doi.org/10.5962/bhl.part.2809
    McGown, L.S., Dixon, M.T. & Ammerman, L.K. (1994) Geographic distribution. Syrrhophus cystignathoides. Herpetological Review, 25, 32.
    Miller, R.R. (1981) Coevolution of deserts and pupfishes (genus Cyprinodon) in the American Southwest. In: Naiman, R.J. & Soltz, D.L. (Eds.), Fishes in North American Deserts. John Wiley & Sons, New York, New York, pp. 39–94.
    Morafka, D.J. (1977) Biogeographical Analysis of the Chihuahuan Desert Through Its Herpetofauna. W. Junk Publishers, Netherlands, 317 pp. https://doi.org/10.1007/978-94-010-1318-5
    Powell, R., Conant, R. & Collins, J.T. (2016) Peterson field guide to reptiles and amphibians of eastern and central North America. 4th Edition. Houghton Mifflin Harcourt press, Boston, Massachusetts, 512 pp.
    Rambaut, A. (2006–2018) FigTree, Tree Figure drawing tool. Version 1.4.4. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 16 December 2020)
    Rambaut, A. & Drummond, A.J. (2002–2018) Tree Annotator. Version 1.10.4. MCMC output analysis. Available from: https://beast-dev.github.io/beast-mcmc (accessed 20 February 2022)
    Rambaut, A., Drummond, A.J. Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67 (5), 901–904.  https://doi.org/10.1093/sysbio/syy032
    Riddle, B.R. (1995) Molecular biogeography in the pocket mice (Perognathus and Chaetodipus) and grasshopper mice (Onychomys): The Late Cenozoic development of a North American aridlands rodent guild. Journal of Mammalogy, 76, 283–301. https://doi.org/10.2307/1382342
    Rosenthal, J. & Fostner, M.R.J. (2014) Effects of Plio-Pleistocene Barrier on Chihuahuan Desert Herpetofauna. In: Cathryn, H. & John, K. (Eds.), Proceedings of the Sixth Symposium on the Natural Resources of the Chihuahuan Desert Region. Chihuahuan Desert Research Institute, Fort Davis, Texas, pp. 269–282.
    Rozas, J., Ferrer-Mata1, A., Sánchez-DelBarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S.E. & Sánchez-Gracia, A. (2017) DnaSP v6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution, 34, 3299–3302. https://doi.org/10.1093/molbev/msx248
    Suchard, M.A., Lemey, P., Baele, G., Ayres, D.L., Drummond, A.J. & Rambaut, A.J. (2018) Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution, 4 (vey016), 1–5. https://doi.org/10.1093/ve/vey016
    Templeton, A.R., Crandall, K.A. & Sing, C.F. (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data III. Cladogram estimation. Genetics, 132, 619–633. https://doi.org/10.1093/genetics/132.2.619
    Vences, M., Thomas, M., Van Der Meijden, A., Chiari, Y. & Vieites, D. (2005) Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians. Frontiers in Zoology, 2, 5. https://doi.org/10.1186/1742-9994-2-5
    Wake, D. & Lynch, J.F. (1976) The distribution, ecology, and evolutionary history of Plethodontid salamanders of in tropical America. Science Bulletin, #25, 1–65.
    Williams, A.A., Williams, A.J. & Manuel, K. (2012) Geographic distribution. Syrrhophus cystignathoides. Herpetological Review, 43, 439. 

  2.