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Type: Article
Published: 2023-03-27
Page range: 130-140
Abstract views: 436
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Taxonomic status of Pseudophilautus conniffae (Anura: Rhacophoridae) an endemic shrub frog restricted to South–Western wet zone of Sri Lanka

1Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
1Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
2Postgraduate Institute of Archaeology, Colombo 07, Sri Lanka
1Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
1Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
1Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
Herpetology Lab, Department of Zoology, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
Amphibia Taxonomy Shrub frogs DNA barcoding Synonymy Delimitation

Abstract

Pseudophilautus conniffae from Lowland wet zone of Sri Lanka, was described as a new species in 2019. The validity of the new species was questionable and was often challenged as it shares strong morphological resemblance with P. limbus. Moreover, the phylogenetic placement of P. conniffae was unknown as no molecular data was available until now. Here, we generated 16S DNA sequences and re-examined the external morphological characters to assess its taxonomic distinctiveness. Pseudophilautus conniffae was recovered as being close to P. limbus with strong posterior probability and bootstrap support. The uncorrected pairwise genetic distance between P. conniffae and P. limbus was negligible, being less than 0.3% for the 16S gene fragment. Further two molecular species delimitation methods, ABGD and mPTP suggested that P. conniffae and P. limbus are a single operational taxonomic unit. The Principal Component Analysis of the morphometric characters also resulted in overlapping clusters. These results suggest that the newly described P. conniffae is not a valid species and we conclude that P. conniffae as a junior synonym of P. limbus.

 

References

  1. Batuwita, S., De Silva, M. & Udugampala, S. (2019) Description of a new species of Pseudophilautus (Amphibia: Rhacophoridae) from southern Sri Lanka. Journal of Threatened Taxa, 11 (1), 13120–13131. https://doi.org/10.11609/jott.3903.11.1.13120-13131
    Borzée, A., Park, S., Kim, A., Kim, H.T. & Jang, Y. (2013) Morphometrics of two sympatric species of tree frogs in Korea: a morphological key for the critically endangered Hyla suweonensis in relation to H. japonica. Animal Cells and Systems, 17 (5), 348–356. https://doi.org/10.1080/19768354.2013.842931
    Chan, K.O., Grismer, L.L. & Brown, R.M. (2018) Comprehensive multi-locus phylogeny of Old-World tree frogs (Anura: Rhacophoridae) reveals taxonomic uncertainties and potential cases of over- and underestimation of species diversity. Molecular Phylogenetics and Evolution, 127, 1010–1019. https://doi.org/10.1016/j.ympev.2018.07.005
    Chernomor, O., Von Haeseler, A. & Quang Minh, B. (2016) Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices. Systematic biology, 65 (6), 997–1008. https://doi.org/10.1093/sysbio/syw037
    Ellepola, G., Herath, J., Manamendra-Arachchi, K., Wijayathilaka, N., Senevirathne, G., Pethiyagoda, R. & Meegaskumbura, M. (2021) Molecular species delimitation of shrub frogs of the genus Pseudophilautus (Anura, Rhacophoridae). PLoS ONE, 16 (10), e0258594. https://doi.org/10.1371/journal.pone.0258594
    IUCN (2022) The IUCN Red List of Threatened Species. Version 2022-1. Available from: https://www.iucnredlist.org (accessed 30 July 2022)
    Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14 (6), 587–589. https://doi.org/10.1038/nmeth.4285
    Kapli, P., Lutteropp, S., Zhang, J., Kobert, K., Pavlidis, P., Stamatakis, A. & Flouri, T. (2017) Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics, 33 (11), 1630–1638. https://doi.org/10.1093/bioinformatics/btx025
    Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution, 33 (7), 1870–1874.https://doi.org/10.1093/molbev/msw054
    Leaché, A.D. & Fujita, M.K. (2010) Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proceedings of the Royal Society B: Biological Sciences, 277 (1697), 3071–3077.https://doi.org/10.1098/rspb.2010.0662
    Luo, A., Ling, C., Ho, S.Y.W. & Zhu, C. D. (2018) Comparison of methods for molecular species delimitation across a range of speciation scenarios. Systematic Biology, 67 (5), 830–846. https://doi.org/10.1093/sysbio/syy011
    Manamendra-Arachchi, K. & Pethiyagoda, R. (2005) The Sri Lankan shrub-frogs of the genus Philautus Gistel, 1848 (Ranidae: Rhacophorinae), with description of 27 new species. Raffles Bulletin of Zoology, 12, 163–303.
    Meegaskumbura, M., Bossuyt, F., Pethiyagoda, R., Manamendra-Arachchi, K., Bahir, M., Milinkovitch, M. C. & Schneider, C. J. (2002) Sri Lanka: An Amphibian Hot Spot. Science, 298 (5592), 379–379.https://doi.org/10.1126/science.298.5592.379
    Meegaskumbura, M. & Manamendra-Arachchi, K. (2005) Description of eight new species of shrub frogs (Ranidae: Rhacophorinae: Philautus) from Sri Lanka. The Raffles Bulletin of Zoology, 12, 305–338.
    Meegaskumbura, M., Manamendra-Arachchi, K. & Pethiyagoda, R. (2009) Two new species of shrub frogs (Rhacophoridae: Philautus) from the lowlands of Sri Lanka. Zootaxa, 2122, 51–68.
    Meegaskumbura, M., Senevirathne, G., Manamendra-Arachchi, K., Pethiyagoda, R., Hanken, J. & Schneider, C.J. (2019) Diversification of shrub frogs (Rhacophoridae, Pseudophilautus) in Sri Lanka—Timing and geographic context. Molecular Phylogenetics and Evolution, 132, 14–24. https://doi.org/10.1016/j.ympev.2018.11.004
    Minh, B.Q., Nguyen, M.A.T. & Von Haeseler, A. (2013) Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30 (5), 1188–1195. https://doi.org/10.1093/molbev/mst024
    Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32 (1), 268–274. https://doi.org/10.1093/molbev/msu300
    Palumbi, S., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) 16s RNA primers. The Simple FoolVs Guide to PCR. Version 2.
    Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21 (8), 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
    Rambaut A. (2016). Figtree. Version 1.4.3. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 15 June 2022)
    Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539–542. https://doi.org/10.1093/sysbio/sys029
    Senevirathne, G., Samarawickrama, V.A.M.P.K., Wijayathilaka, N., Manamendra-Arachchi, K., Bowatte, G., Samarawickrama, D.R.N.S. & Meegaskumbura, M. (2018) A new frog species from rapidly dwindling cloud forest streams of Sri Lanka—Lankanectes pera (Anura, Nyctibatrachidae). Zootaxa, 4461 (4), 519–538.https://doi.org/10.11646/zootaxa.4461.4.4
    Vences, M., Thomas, M., Van der Meijden, A., Chiari, Y. & Vieites, D.R. (2005) Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians. Frontiers in Zoology, 2 (1), 1–12. https://doi.org/10.1186/1742-9994-2-5
    Wickramasinghe, L.J.M., Munindradasa, D.A.I. & Fernando, P. (2012) A new species of Polypedates Tschudi (Amphibia, Anura, Rhacophoridae) from Sri Lanka. Zootaxa, 3498 (1), 63. https://doi.org/10.11646/zootaxa.3498.1.4
    Wickramasinghe, L.J.M., Vidanapathirana, D.R., Airyarathne, S., Rajeev, G., Chanaka, A., Pastorini, J., Chathuranga, G. & Wickramasinghe, N. (2013a) Lost and found: One of the world’s most elusive amphibians, Pseudophilautus stellatus (Kelaart 1853) rediscovered. Zootaxa, 3620 (1), 112–118. https://doi.org/10.11646/zootaxa.3620.1.5
    Wickramasinghe, L.J.M., Vidanapathirana, D.R., Rajeev, M.D.G., Ariyarathne, S.C., Chanaka, A.W.A., Priyantha, L.L.D., Bandara, I.N. & Wickramasinghe, N. (2013b) Eight new species of Pseudophilautus (Amphibia: Anura: Rhacophoridae) from Sripada World Heritage Site (Peak Wilderness), a local amphibian hotspot in Sri Lanka. Journal of Threatened Taxa, 5 (4), 3789–3920. https://doi.org/10.11609/jott.o3099.3789-920
    Wijayathilaka, N., Garg, S., Senevirathne, G., Karunarathna, N., Biju, S.D. & Meegaskumbura, M. (2016) A new species of Microhyla (Anura: Microhylidae) from Sri Lanka: an integrative taxonomic approach. Zootaxa, 4066 (3), 331–342. http://doi.org/10.11646/zootaxa.4066.3.9
    Wijayathilaka, N., Perera, U., Manamendra-Arachchi, K., Ellepola, G., Adhikari, H., Wijayasekara, S., Wickramasinghe, M., Prathap, V. & Meegaskumbura, M. (2023) Pseudophilautus pardus, a junior synonym of P. viridis (Amphibia: Anura: Rhacophoridae). Zootaxa, 5227 (4), 459–472. https://doi.org/10.11646/zootaxa.5227.4.4