Abstract
A new species of freshwater pipefish, Microphis arrakisae sp. nov., is described from the West Indonesian Islands (Java, Bali and Lombok). This species is morphologically very close to Microphis retzii (Bleeker, 1856), which is found in the eastern Indonesian Islands (Sulawesi, Ceram, Ambon and Papua). However, it can be distinguished by its in vivo coloration. Furthermore, genetic analysis of the partial COI gene (barcoding) indicates that it represents a distinct genetic lineage in the Indonesian region.
References
- Darwall, W.R. & Freyhof, J.Ö.R.G. (2016) Lost fishes, who is counting? The extent of the threat to freshwater fish biodiversity. Conservation of freshwater fishes. Cambridge University Press, Cambridge, 36 pp. https://doi.org/10.1017/CBO9781139627085.002 DOI: https://doi.org/10.1017/CBO9781139627085.002
- Dawson, C.E. (1977) Synopsis of Syngnathidae pipefishes usually referred to the genus Ichtyocampus Kaup, with description of new genera and species. Bulletin of Marine Science, 27 (4), 595–650.
- Dawson, C.E. (1984) Revision of the genus Microphis Kaup (Pisces: Syngnathidae). Bulletin of marine science, 35 (2), 117–181. https://doi.org/10.2307/1445135 DOI: https://doi.org/10.2307/1445135
- Dawson, C.E. (1985) Indo-Pacific pipefishes (Red Sea to the Americas). Gulf Coast Research Laboratory, Ocean Springs. Indo-Pacific pipefishes (Red Sea to the Americas). Gulf Coast Research Laboratory, Ocean Springs, Ocean Springs, Mississippi, 230 pp.
- Haÿ, V., Mennesson, I.M., Lord, C. & Keith, P. (2023a) Why several when one can unit them all? Integrative taxonomic revision of the Indo-Pacific freshwater pipefish (Nerophinae). Zoological Journal of the Linnean Society, 198 (4), 923–956. https://doi.org/10.1093/zoolinnean/zlad007 DOI: https://doi.org/10.1093/zoolinnean/zlad007
- Haÿ, V., Berland, S., Mennesson, I.M., Medjoubi, K., Somogyi, A., Keith, P. & Lord, C. (2023b) Unmasking pipefish otolith using synchrotron-based scanning X-ray fluorescence. Scientific Reports, 13 (1), 4794. https://doi.org/10.1038/s41598-023-31798-z DOI: https://doi.org/10.1038/s41598-023-31798-z
- Haÿ, V., Mennesson, I.M., Carpentier, C., Dahruddin, H., Sauri, S., Limmon, G., Wowor, D., Hubert, N., Keith, P. & Lord, C. (2024) Phylogeography of Microphis retzii (Bleeker, 1856) and Microphis brachyurus (Bleeker, 1854) in the Pacific. Journal of fish (accepted)
- Hoese, D.F., Hadiaty, R.K. & Herder, F. (2015) Review of the dwarf Glossogobius lacking head pores from Malili lakes, Sulawesi, with a discussion of the definition of the genus. Raffles Bulletin of Zoology, 63, 14–26.
- Hoffman, M., Hilton-Taylor, C., Angulo, A., Böhm, M., Brooks, T.M., Butchart, S.H.M., Carpenter, K.E., Chanson, J., Collen, B. & Cox, N.A. (2010) The impact of conservation on the status of the world’s vertebrates. Science, 330, 1503–1509. https://doi.org/10.1126/science.1194442 DOI: https://doi.org/10.1126/science.1194442
- Hubert, N., Wibowo, K.A., Busson, F., Caruso, D., Sulandari, S., Nafiqoh, N., Pouyaud, L., Rüber, L., Avarre, J.C., Herder, F., Hanner, R., Keith, P. & Hadiaty, R.K. (2015) DNA Barcoding Indonesian freshwater fishes: challenges and prospects. DNA Barcodes, 3, 144–169. https://doi.org/10.1515/dna-2015-0018 DOI: https://doi.org/10.1515/dna-2015-0018
- Hutuma, A.A., Hadiaty, R.K. & Hubert, N. (2016) Biogeography of Indonesian freshwater fishes: current progress. Treubia, 42, 17–30.
- Ivanova, N.V., Trianafyllidis, A., Alvarez, P., Lopes, P., Garcia-Vazquez, E. & Trianafyllidis, C. (2007) Universal primer cocktails for fish DNA Barcoding. Molecular Ecology Notes, 7 (4), 544–548. https://doi.org/10.1111/j.1471-8286.2007.01748.x DOI: https://doi.org/10.1111/j.1471-8286.2007.01748.x
- Katoh, K., Misawa, K., Kuma, K.I. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple alignment based on fast Fourier transform. Nucleic Acid Research, 30 (14), 3059–3066. https://doi.org/10.1093/nar/gkf436 DOI: https://doi.org/10.1093/nar/gkf436
- Keith, P., Lord, C. & Maeda, K. (2015) Indo-Pacific Sicydiine gobies. Biodiversity, life traits and conservation. Société Française d’Ichtyologie, Paris, 256 pp.
- Keith, P., Dahruddin, H., Limmon, G. & Hubert, N. (2018) A new species of Schismatogobius (Teleostei: Gobiidae) from Halmahera (Indonesia). Cybium: revue international d’Ichtyologie, 42 (2), 195–200.
- Keith, P., Mennesson, I.M., Delrieu-Trottin, E. & Hubert, N. (2020). Giuris (Teleostei: Eleotridae) from Indonesia, with description of a new species. Cybium: Revue Internationale d’Ichtyologie, 44 (4), 317–329.
- Keith, P., Delrieu-Trottin, E., Utama, I.V., Sauri, S., Busson, F., Nurjirana, N., Wowor, D., Dahruddin, H. & Hubert, N. (2021) A new species of Schismatogobius (Teleostei: Gobiidae) from Sulawesi (Indonesia). Cybium: Revue Internationale d’Ichtyologie, 45 (1), 53–58.
- Kottelat, M. (2013) The fishes of the inland waters of Southeast Asia: a catalogue and core bibliography of the known to occur in freshwaters, mangroves and estuaries. Raffles Bulletin of Zoology, Supplement 27, 1–667.
- Lanfear, R., Calcott, B., Ho, S.Y. & Guindon, S. (2012) ParitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29 (6), 1695–1701. https://doi.org/10.1093/molbev/mss020 DOI: https://doi.org/10.1093/molbev/mss020
- Lohman, D.J., de Bruyn, M., Page, T., von Rintelen, K., Hall, R., Ng, P.K.L., Shih, H.T., Carvalho, G.R. & von Rintelen, T. (2011) Biogeography of the Indo-Australian archipelago. Annual Review of Ecology, Evolution and Systematics, 42, 205–226. https://doi.org/10.1146/annurev-ecolsys-102710-145001 DOI: https://doi.org/10.1146/annurev-ecolsys-102710-145001
- Mennesson, I.M., Keith, P., Sauri, S., Busson, F., Delrieu-Trottin, E., Limmon, G., Sukmono, T., Jiran, Risdawati, R., Dahruddin, H. & Hubert, N. (2021) Eleotris (Teleostei: Eleotridae) from Indonesian with description of three New species within the ‘melanosoma’ neuromast pattern group. Pacific Science, 75 (4), 469–496. https://doi.org/10.2984/75.4.2 DOI: https://doi.org/10.2984/75.4.2
- Messing, J. (1983) New M13 vectors for cloning. Methods in Enzomology, 101, 20–78. https://doi.org/10.1016/0076-6879(83)01005-8 DOI: https://doi.org/10.1016/0076-6879(83)01005-8
- Pollom, R.A., Ralph, G.M., Pollock, C.M. & Vincent, A.C. (2021) Global extinction risk for seahorses, pipefishes and their near relatives (Syngnathiformes). Oryx, 55 (4), 497–506. https://doi.org/10.1017/S0030605320000782 DOI: https://doi.org/10.1017/S0030605320000782
- Rambaut, A. (2007) Tracer. Available from: http://beast.bio.ed.ac.uk/tracer (accessed 1 October 2024)
- Rambaut, A. (2012) FigTree. Version 1.4.0: tree figure drawing tool. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 1 October 2024)
- Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539–542. https://doi.org/10.1093/sysbio/sys029 DOI: https://doi.org/10.1093/sysbio/sys029
- Ward, R.D., Zelmak, T.S., Innes, B.H., Last, P.R. & Hebert, P.D. (2005) DNA Barcoding Australia’s fish species. Philosophical Transactions of the Royal Society B. Biological Science, 360 (1462), 1847–1857. https://doi.org/10.1098/rstb.2005.1716 DOI: https://doi.org/10.1098/rstb.2005.1716