Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2008-11-12
Page range: 25–36
Abstract views: 103
PDF downloaded: 2

Phylogeny and taxonomy of the Middle Eastern geckos of the genus Cyrtopodion and their selected relatives

Department of Ecology, Faculty of Science, Charles University in Prague, Viničná 7, CZ-128 44 Praha 2, Czech Republic
Department of Ecology, Faculty of Science, Charles University in Prague, Viničná 7, CZ-128 44 Praha 2, Czech Republic
Department of Zoology, Faculty of Science, Charles University in Prague, Viničná 7, CZ-128 44 Praha 2, Czech Republic
Reptilia Agamura angular-toed Bunopus lizards mtDNA

Abstract

Representatives of the gekkonid genus Cyrtopodion and related genera form a highly diversified group of Palearctic geckos, whose taxonomy is still unstable and phylogeny little known. This study tries to improve this situation by attempting to reconstruct the phylogeny based on two molecular markers (partial sequences of mitochondrial cytochrome b and 12S rRNA genes) in the Middle Eastern species of the genus Cyrtopodion and members of the genera Agamura and Bunopus. The results support the monophyly of the species groups within the genus Cyrtopodion as defined by Anderson (1999), but relationships between these groups remain largely unresolved. The kotschyi group (= subgenus Mediodactylus) is not closely related to the rest of the genus Cyrtopodion and should be treated as an autonomous genus. Agamura persica forms a monophyletic group with agamuroides + caspium + scabrum species groups. The genus Bunopus does not seem to be closely related to this clade. We briefly discuss the implications of our findings and stress the importance of further molecular studies in Palearctic geckos.

References

  1. Ananjeva, N.B., Orlov, N.L., Khalikov, R.G., Darevsky, I.S., Ryabov, S.A. & Barabanov, A.V. (2006) The reptiles of northern Eurasia: taxonomic diversity, distribution, conservation status. Pensoft Publishers, Sofia, 245 pp.

    Anderson, S.C. (1973) A new species of Bunopus (Reptilia: Gekkonidae) from Iran and a key to lizards of the genus Bunopus. Herpetologica, 29, 355–358.

    Anderson, S.C. (1999) The Lizards of Iran. Society for the Study of Amphibians and Reptiles. Ithaca, New York, 442 pp.

    Annandale, T.N. (1906) The Indian geckos of the genus Gymnodactylus. Records of the Indian Museum, 9, 309–326.

    Austin, J.J., Arnold, E.N. & Jones, C.G. (2004) Reconstructing an island radiation using ancient and recent DNA: the extinct and living day geckos (Phelsuma) of the Mascarene islands. Molecular Phylogenetics and Evolution, 31, 109–122.

    Baig, K.J. (1998) A new species of Tenuidactylus (Sauria: Gekkonidae) from Balochistan, Pakistan. Hamadryad, 23, 127–132.

    Blanford, W.T. (1874) Descriptions of new lizards from Persia and Baluchistán. Annals and Magazine of Natural History, ser. 4, 13, 453–455.

    Böhme, W. (1985) Zur Nomenklatur der paläarktischen Bogenfingergeckos, Gattung Tenuidactylus Szczerbak & Golubew, 1984 (Reptilia: Gekkonidae). Bonner Zoologische Beiträge, 36, 95–98. (in German with English abstract)

    Brandley, M.C. & de Queiroz, K. (2004) Phylogeny, ecomorphological evolution, and historical biogeography of the Anolis cristatellus series. Herpetological Monographs, 18, 90–126.

    Carranza, S., Arnold, E.N., Mateo, J.A. & Geniez, P. (2002) Relationships and evolution of the North African geckos, Geckonia and Tarentola (Reptilia: Gekkonidae), based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution, 23, 244–256.

    Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T.J., Higgins, D.G. & Thompson, J.D. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research, 31, 3497–3500.

    Cunningham, C.W. (1997a) Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution, 14, 733–740.

    Cunningham, C.W. (1997b) Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Systematic Biology, 46, 464–478.

    Duda, P.L. & Sahi, D.N. (1978a) Cyrtodactylus himalayanus: a new gekkonid species from Jammu, India. Journal of Herpetology, 12, 351–354.

    Duda, P.L. & Sahi, D.N. (1978b) Cyrtodactylus mansarulus n. sp. from Jammu. Indian Science Congress Association Proceedings, 65, 211; (C).

    Farris, J.S., Källersjö, M., Kluge, A.G. & Bult, C. (1994) Testing significance of incongruence. Cladistics, 10, 315–320.

    Farris, J.S., Källersjö, M., Kluge, A.G. & Bult, C. (1995) Constructing a significance test for incongruence. Systematic Biology, 44, 570–572.

    Felsenstein, J. (1985) Confidence limits on phylogeny: an approach using the bootstrap. Evolution, 39, 783–789.

    Gamble, T., Bauer, A.M., Greenbaum, E. & Jackman, T.R. (2008) Evidence for Gondwanan vicariance in an ancient clade of gecko lizards. Journal of Biogeography, 35, 88–104.

    Gatesy, J., DeSalle, R. & Wheeler, W.C. (1993) Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Molecular Phylogenetics and Evolution, 2, 152–157.

    Golubev, M.L. & Szczerbak, N.N. (1981a) Novyj vid roda Gymnodactylus Spix, 1825 (Reptilia, Sauria, Gekkonidae) iz Pakistana. Vestnik Zoologii, 1981(3), 40–45. (in Russian with English abstract)

    Golubev, M.L. & Szczerbak, N.N. (1981b) Carinatogecko gen. n. (Reptilia, Gekkonidae) — Novyj rod gekkonovykh jashcheric iz jugo-zapadnoj Asii. Vestnik Zoologii, 1981(5), 34–41. (in Russian with English abstract)

    Golubev, M.L. & Szczerbak, N.N. (1983) Gymnodactylus scaber (Heyden), 1827 = Cyrtodactylus basoglui Baran et Gruber, 1892, syn. n. Vestnik Zoologii, 1983(2), 54. (in Russian)

    Han, D., Zhou, K. & Bauer, A.M. (2004) Phylogenetic relationships among gekkotan lizards inferred from C-mos nuclear DNA sequences and a new classification of the Gekkota. Biological Journal of the Linnean Society, 83, 353–368.

    Hickson, R.E., Simon, C., Cooper, A., Spicer, D.S., Sullivan, J. & Penny, D. (1996) Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. Molecular Biology and Evolution, 13, 150–169.

    Honda, M., Ota, H., Kobayashi, M., Nabhitabhata, J., Yong, H.-S. & Hikida, T. (1999) Phylogenetic relationships of the flying lizards, genus Draco (Reptilia, Agamidae). Zoological Science, 16, 535–549.

    Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754–755.

    Kasapidis, P., Magoulas, A., Mylonas, M. & Zouros, E. (2005) The phylogeography of the gecko Cyrtopodion kotschyi (Reptilia: Gekkonidae) in the Aegean archipelago. Molecular Phylogenetics and Evolution, 35, 612–623.

    Khan, M.S. (1980) A new species of gecko from northern Pakistan. Pakistan Journal of Zoology, 12, 11–16.

    Khan, M.S. (1989) Rediscovery and redescription of the highland ground gecko, Tenuidactylus montiumsalsorum (Annandale, 1913). Herpetologica, 45, 46–54.

    Khan, M.S. (1991) A new Tenuidactylus gecko from the Sulaiman Range, Punjab, Pakistan. Journal of Herpetology, 25, 199–204.

    Khan, M.S. (1993a) A new angular-toed gecko from Pakistan, with remarks on the taxonomy and a key to the species belonging to genus Cyrtodactylus (Reptilia: Sauria: Geckkonidae). Pakistan Journal of Zoology, 25, 67–73.

    Khan, M.S. (1993b) A new sandstone gecko from Fort Munro, Dera Ghazi Khan District, Punjab, Pakistan. Pakistan Journal of Zoology, 25, 217–221.

    Khan, M.S. (1997) Validity, generic redesignation, and taxonomy of western rock gecko Gymnodactylus ingoldbyi Procter, 1923. Russian Journal of Herpetology, 4, 83–88.

    Khan, M.S. (2001) Taxonomic notes on angular-toed Gekkota of Pakistan, with description of a new species of genus Cyrtopodion. Pakistan Journal of Zoology, 33, 13–24.

    Khan, M.S. (2003a) Anmerkungen zur Morphologie, Verbreitung und den Habitatpräferenzen einiger pakistanischer Geckos. Sauria, 25(3), 35–47 [erratum in 25(3), 27]. (in German with English abstract)

    Khan, M.S. (2003b) Questions of generic designation of angular-toed geckos of Pakistan with descriptions of three new genera (Reptilia: Gekkonidae). Journal of Natural History and Wildlife, 2, 1–9.

    Khan, M.S. (2004) Annotated Checklist of Amphibians and Reptiles of Pakistan. Asiatic Herpetological Research, 10, 191–201.

    Khan, M.S. & Baig, K.J. (1992) A new Tenuidactylus gecko from northeastern Gilgit Agency, North Pakistan. Pakistan Journal of Zoology, 24, 273–277.

    Khan, M.S. & Tasnim, R. (1990) A new gecko of the genus Tenuidactylus from northeastern Punjab, Pakistan, and southwestern Azad Kashmir. Herpetologica, 46, 142–148.

    Kjer, K.M. (1995) Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from the frogs. Molecular Phylogenetics and Evolution, 4, 314–330.

    Kluge, A.G. (1983) Cladistic relationships among gekkonid lizards. Copeia, 1983, 465–475.

    Kluge, A.G. (1985) Notes on gekko nomenclature (Sauria: Gekkonidae). Zoologische Mededelingen Leiden, 59, 95–100.

    Kluge, A.G. (2001) Gekkotan lizard taxonomy. Hamadryad, 26, 1–209.

    Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Pääbo, S. & Villablanca, F.X. (1989) Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America, 86, 6196–6200.

    Krysko, K.L., Rehman, H. & Auffenberg, K. (2007) A new species of Cyrtopodion (Gekkonidae: Gekkoninae) from Pakistan. Herpetologica, 63, 100–113.

    Kumar, S., Tamura, K., Jakobsen, I.B. & Nei, M. (2001) MEGA 2: Molecular Evolutionary Genetics Analysis software. Bioinformatics, 17, 1244–1245.

    Lawson, R., Slowinski, J.B. & Burbrink, F.T. (2004) A molecular approach to discerning the phylogenetic placement of the enigmatic snake Xenophidion schaeferi among the Alethinophidia. Journal of Zoology, London, 263, 285–294.

    Leaché, A.D. & Reeder, T.W. (2002) Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Systematic Biology, 51, 44–68.

    Leviton, A.E. & Anderson, S.C. (1984) Description of a new species of Cyrtodactylus from Afghanistan with remarks on the status of Gymnodactylus longipes and Cyrtodactylus fedtschenkoi. Journal of Herpetology, 18, 270–276.

    Leviton, A.E., Anderson, S.C., Kraig, K.A. & Minton, S.A. (1992) Handbook to Middle East amphibians and reptiles. Contributions in Herpetology, No. 8. Society for the Study of Amphibians and Reptiles, Oxford, Ohio, 252 pp.

    Minton, S.A., Anderson, S.C. & Anderson, J.A. (1970) Remarks on some geckos from southwest Asia, with description of three new forms and a key to the genus Tropiocolotes. Proceedings of the California Academy of Sciences, ser. 4, 37, 333–362.

    Nazarov, R.A. & Rajabizadeh, M. (2007) A new species of angular-toed gecko of the genus Cyrtopodion (Squamata: Sauria: Gekkonidae) from south-east Iran (Sistan-Baluchistan province). Russian Journal of Herpetology, 14, 137–144.

    Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817–818.

    Ronquist, F. & Huelsenbeck, J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    Rösler, H. (2000) Kommentierte Liste der rezent, subrezent und fossil bekannten Geckotaxa (Reptilia: Gekkonomorpha). Gekkota, 2, 28–153.

    Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H. & Flook, P. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651–701.

    Smith, M.A. (1935) The fauna of British India, including Ceylon and Burma. Reptilia and Amphibia. Vol. 2, Sauria. Taylor and Francis, London, 440 pp.

    Swofford, D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.

    Szczerbak, N.N. (1978) Gymnodactylus turcmenicus sp. n. (Reptilia, Sauria) — Novyj vid gekkona iz juzhnoj Turkmenii. Vestnik Zoologii, 1978(3), 39–44. (in Russian with English abstract)

    Szczerbak, N.N. (1988) K nomenklature palearkticheskikh tonkopalykh gekkonov (Tenuidactylus, Gekkonidae, Reptilia) Vestnik Zoologii, 1988(4), 84–85. (in Russian)

    Szczerbak, N.N. (2003) Guide to the reptiles of the eastern Palearctic. Krieger Publishing Company, Malabar, Florida, 260 pp.

    Szczerbak, N.N. & Golubev, M.L. (1977) Materialy k sistematike palearkticheskikh gekkonov (rody Gymnodactylus, Bunopus, Alsophylax). Gerpetologicheskij Sbornik. Trudy Zoologicheskogo Instituta, Akademiya Nauk SSSR, 74, 120–133. (in Russian with English abstract)

    Szczerbak, N.N. & Golubev, M.L. (1984) O rodovoj prinadlezhnosti i vnutrirodovoj strukture palearkticheskikh golopalykh gekkonov (Reptilia, Gekkonidae, Tenuidactylus gen. n.). Vestnik Zoologii, 1984(2), 51–56. (in Russian with English abstract)

    Szczerbak, N.N. & Golubev, M.L. (1986) Gekkony fauny SSSR i sopredelnych stran. Naukova Dumka, Kiev, 234 pp. (in Russian)

    Tavaré, S. (1986) Some probabilistic and statistical problems on the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences, 17, 57–86.

    Titus, T.A. & Frost, D.R. (1996) Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania). Molecular Phylogenetics and Evolution, 6, 49–62.

    Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignments aided by quality analysis tools. Nucleic Acids Research, 24, 4876–4882.

    Uetz, P. & Hallermann, J. (2007) The new reptile database. Available from http://www.reptile-database.org (accessed 10 February 2008).

    Underwood, G. (1954) On the classification and evolution of geckos. Proceedings of the Zoological Society of London, 124, 469–492.

    Vicario, S., Caccone, A. & Gauthier, J. (2003) Xantusiid “night“ lizards: a puzzling phylogenetic problem revisited using likelihood-based Bayesian methods on mtDNA sequences. Molecular Phylogenetics and Evolution, 26, 243–261.

    Whiting, A.S., Bauer, A.M. & Sites, J.W., Jr. (2003) Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae). Molecular Phylogenetics and Evolution, 29, 582–598.

    Wiens, J.J. & Hollingsworth, B. (2000) War of the iguanas: conflicting molecular and morphological phylogenies and long-branch attraction in iguanid lizards. Systematic Biology, 49, 143–159.

    Witte, G.F., de (1980) Note relative a Rhinogekko misonnei de Witte et Agamura femoralis M. Smith (Reptilia Sauria). Bulletin de l’Institute Royale Science Naturelles de Belgique, Biologie, 52, 1–3. (in French)