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Type: Article
Published: 2009-05-11
Page range: 23–32
Abstract views: 66
PDF downloaded: 35

Global genetic homogeneity in the deep-sea foraminiferan Epistominella exigua (Rotaliida: Pseudoparrellidae)

Department of Zoology and Animal Biology, University of Geneva, Switzerland
National Oceanography Centre, Southampton, Southampton SO14 3ZH, UK
Department of Zoology and Animal Biology, University of Geneva, Switzerland
shells deep-sea diversity meiofauna Foraminifera SSU rDNA ITS rDNA geographic distribution

Abstract

Epistominella exigua is one of the most common deep-sea foraminiferal morphospecies and has a world-wide distribution. A recent molecular study revealed high genetic similarity between Arctic, Atlantic and Antarctic populations of this species. Here, we show that the small-subunit (SSU) and internal transcribed spacer (ITS) rDNA sequences of an E. exigua population from Pacific are almost identical to those reported previously from the other three oceans. This result confirms the genetic homogeneity of E. exigua, which contrasts with the prevalence of highly differentiated populations in planktonic and shallow-water benthic foraminiferans. We discuss special features of diversifications mechanisms in the deep sea that may be responsible for the lack of genetic differentiation and global distribution of some meiofauna species.

References

  1. Altenbach, A.V., Pflaumann, U., Schiebel, R., Thies, A., Timm, S. & Trauth, M. (1999) Scaling percentages and distributional patterns of benthic foraminifera with flux rates of organic carbon. Journal of Foraminiferal Research 29, 173–185.

    Atkins, M.S., Teske, A.P. & Anderson, D.R. (2000) A survey of flagellate diversity at four deep-sea hydrothermal vents in Eastern Pacific ocean using structural and molecular approaches. Journal of Eukaryotic Microbiology 47, 400–411.

    Clement, M., Posada, D., & Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology. 9, 1657–1659.

    Darling, K. F. & Wade, C. M. (2008) The genetic diversity of planktic foraminifera and the global distribution of ribosomal RNA genotypes. Marine Micropaleontology 67, 216–238.

    Etter, R.J., Rex, M.A., Chase, M.C. & Quattro, J.M. (1999) A genetic dimension to deep-sea biodiversity. Deep-Sea Research I 46, 1095–1099.

    Etter, R. J., Rex, M. A., Chase, M. R. & Quattro, J. M. (2005) Population differentiation decreases with depth in Deep-Sea Bivalves. Evolution 59, 1479–1491.

    Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47–50.

    Excoffier, L., Smouse, P. & Quattro, J. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131, 479–491.

    Finlay, B. J. (2002) Global dispersal of free-living microbial eukaryote species. Science 296, 1061–1063.

    Galtier, N., Gouy, M. & Gautier, C. (1996) SEAVIEW and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny. Comput. Applic. Biosci. 12, 543–548.

    Gooday, A.J. (1988) A response by benthic foraminifera to phytodetritus deposition in the deep sea. Nature 332, 70–73.

    Gooday, A.J. (1993) Deep-sea benthic foraminiferal species which exploit phytodetritus: characteristic features and controls on distribution. Marine Micropaleontology 22, 187–205.

    Grassle, J. F. & Maciolek, N. (1992) Deep-sea species richness: Regional and local diversity estimates from quantitative bottom samples. American Naturalist 139, 313–341.

    Guindon, S. & Gascuel, O. (2003) A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. Systematic Biology 52, 696–704.

    Lambshead, J. D. P. & Boucher G. (2003) Marine nematode deep-sea biodiversity – hyperdiverse or hype? Journal of Biogeography 30, 475–485.

    Levin, L.A., Etter, R.J., Rex, M.A., Gooday, A.J., Smith, C.R., Pineda, J., Stuart, C.T., Hessler, R.R. & Pawson, D. (2001) Environmental influences on regional deep-sea species diversity. Annual Review Ecology and Systematics 32, 51–93.

    Majewski W., Lecroq B., Sinniger F., Pawlowski J. (2007) Monothalamous foraminifera from Admiralty Bay, King George Island, West Antarctica. Polish Polar Research 28, 187–210.

    Murray, J.W., (1991) The Ecology and Palaeoecology of Benthic Foraminifera. Longman, Harlow, 397 pp.

    Murray, J.W., (2006) Ecology and Applications of Benthic Foraminifera. Cambridge University Press, the Edinburgh Building, Cambridge CB2 2RU, UK, 438 pp.

    Pawlowski, J., Fahrni J., Lecroq B., Longet D., Cornelius N., Excoffier L., Cedhagen T.& Gooday A., J. (2007) Bipolar gene flow in deep-sea benthic foraminifera. Molecular Ecology 16, 4089–4096.

    Pawlowski, J. & Holzmann, M. (2008) Diversity and geographic distribution of benthic foraminifera: a molecular perspective. Biodiversity and Conservation 17, 317–328.

    Pawlowski, J., Majewski, W., Longet, D. Guiard, J., Cedhagen, T., Gooday, A.J., Korsun, S., Habura, A.A. & Bowser, S.S. (2008) Genetic differentiation between Arctic and Antarctic monothalamous foraminiferans. Polar Biology 31, 1205–1216.

    Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817–818.

    Slapeta, J., Lopez-Garcia, P. & Morreira, D. (2006) Global Dispersal and Ancient Cryptic Species in the Smallest Marine Eukaryotes. Molecular Biology and Evolution 23, 23–29.

    Sun, X., Corliss, B.C., Brown, C.W., Showers, W.J., (2006). The effect of primary production and seasonality on the distribution of deep-sea benthic foraminifera in the North Atlantic. Deep-Sea Research I 53, 28–47.

    Tsuchiya, M., Kitazato, H. & Pawlowski, J. (2003) Analysis of Internal Transcribed Spacer of ribosomal DNA reveals cryptic speciation in Planoglabratella opercularis. Journal of Foraminiferal Research 33, 285–293.