Skip to main content Skip to main navigation menu Skip to site footer
Type: Articles
Published: 2010-10-15
Page range: 51–60
Abstract views: 32
PDF downloaded: 1

A phylogenetic analysis of Neotoma varia (Rodentia: Cricetidae), a rediscovered, endemic, and threatened rodent from Datil Island, Sonora, Mexico

Centro de Investigaciones Biológicas del Noroeste, Mar Bermejo 195, Playa Palo de Santa Rita, La Paz, Baja California Sur 23090, México
Centro de Investigaciones Biológicas del Noroeste, Mar Bermejo 195, Playa Palo de Santa Rita, La Paz, Baja California Sur 23090, México El Colegio de la Frontera Sur, Departamento Ecología y Sistemática Terrestres, Área Conservación de la Biodiversidad, Carretera Panamericana y Periférico Sur s/n San Cristóbal de Las Casas, Chiapas 29290, México
Mammalia albigula cytochrome b islands subspecies varia

Abstract

The systematics of the rediscovered and threatened rodent, Neotoma varia, from Datil Island in the Gulf of California, was assessed using sequences from the mitochondrial cytochrome b gene (Cyt b) regarding specimens of N. albigula from Tiburon Island and populations on the mainland off Datil Island. Neotoma varia was originally described as a species and subsequently considered a subspecies, relegated to subspecific status based on morphologic characters and few specimens; no genetic analyses have been published. Bayesian inference, maximum-parsimony, maximumlikelihood, and distance optimality criteria based on 828-bp of the Cyt b gene from individuals representing 11 populations, converged on essentially identical tree topologies, consistent with the inclusion of N. varia within N. albigula. The population of Datil Island is related to specimens from Tiburon Island and the adjacent mainland populations showing low levels of genetic differentiation with other subspecies of N. albigula (0.2–1.4%). Previous morphologic analyses indicated inconstancy in characters regarding the holotype; however, N. varia is morphologically different in the oclusal view of the upper molars. Under these conditions, we consider N. varia as a subspecies of N. albigula. N. a. varia has a very specific habitat and is present only on a very small part of the island; in spite of low divergence regarding other N. albigula subspecies, N. a. varia possesses a genetic identity and needs to be considered as a critically endangered population.

References

  1. Álvarez-Castañeda, S.T. (2007) Analysis of the antelope ground squirrel (Ammospermophilus leucurus) of the Baja California peninsula and Gulf of California islands. Journal of Mammalogy, 88, 1160–1169.

    Álvarez-Castañeda, S.T., & Ortega-Rubio, A. (2003) Current status of rodents on islands in the Gulf of California. Biological Conservation, 109, 157–163.

    Álvarez-Castañeda, S.T., Lidicker, W.Z. Jr, & Rios, E. (2009) Revision of the Dipodomys merriami complex in the Baja California Peninsula, Mexico. Journal of Mammalogy, 90,992–1008.

    Álvarez-Castañeda, S.T., Gutiérrez, A., & De la Paz, M. (in press) Rediscovery of the Neotoma population from Datil Island, Sonora, Mexico. Western North American Naturalist.

    Álvarez-Castañeda, S.T., Cortés-Calva, P., Méndez, L., & Ortega-Rubio, A. (2006) Sea of Cortes island development call for mitigation. BioSciences, 56, 825–829.

    Álvarez-Castañeda, S.T., Castro-Arellano, I., Lacher, T., Vázquez, E., & Arroyo-Cabrales, J. (2008) Neotoma albigula. IUCN Red List of Threatened Species. Available from http://www.iucnredlist.org accessed/ (accesed 25 April 2009)

    Bogan, M.A. (1997) On the status on Neotoma varia from Isla Datil, Sonora. In: Yates, T.L., Gannon, W.L., & Wilson, D.E. (Eds), Life among the muses: paper in honor of James S. Findley Special publication. Museum of Southwestern Biology, 3, 81–87.

    Burt, W.H. (1932) Descriptions of heretofore unknown mammals from islands in the Gulf of California, Mexico. Transactions of the San Diego Society of Natural History, 7, 161–182.

    Carreño, A.L., & Helenes, J. (2002) Geology and ages of the islands. In: Case, T.J., Cody, M.L., Ezcurra, E. (Eds), A new island biogeography of the Sea of Cortés. Oxford University Press, New York. pp. 14–40.

    Edwards, C.W., Fulhorst, C.F., & Bradley, R.D. (2001) Molecular phylogenetics of the Neotoma albigula species group: further evidence of a paraphyletic assemblage. Journal of Mammalogy, 82, 267–279.

    Gastil, G., Minch, J., & Phillips, R.P. (1983) The geology and age of the islands. In: Case, T.J., & Cody, M.L. (Eds), Island biogeography in the Sea of Cortéz. University of California Press, Berkeley, California, pp. 13–25.

    Hafner, D.J., Riddle, B.R., & Álvarez-Castañeda, S.T. (2001) Evolutionary relationships of white-footed mice (Peromyscus) on islands in the Sea of Cortéz, Mexico. Journal of Mammalogy, 82, 775–790.

    Hall, E.R. (1981) The mammals of North America, vol 2, 2nd edn. John Wiley & Sons, New York, 1175 pp.

    Hall, E.R., & Genoways, H.H. (1970) Taxonomy of the Neotoma albigula-group of woodrats in central Mexico. Journal of Mammalogy, 51, 504–516.

    IUCN (2008) Red List Categories and Criteria Version 3.1. Available from http://data.iucn.org/themes/ssc/redlists/RLcats2001booklet.html (accesed 11 March 2010)

    Lawlor, T.E. (1983) The mammals. In: Case, T.J., & Cody, M.L. (Eds), Island biogeography in the Sea of Cortez. University of California Press, Berkeley, California, pp. 265–289.

    Nylander, J.A.A. (2004) MrModeltest ver 2.2. Distributed by the author. Evolutionary Biology Center. Uppsala University, Sweden. Available from http://people.scs.fsu.edu/nylander/mrmodeltest2/mrmodeltest2.html

    Posada, D. (2004) Collapse ver 1.1 Available from http://darwin.uvigo.es/software/collapse.html. (accessed 20 November 2008)

    Posada, D., & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817–818.

    Ronquist, F., & Huelsenbeck, J.P. (2003) MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    Semarnat (1994) Norma Oficial Mexicana NOM-059-ECOL-1994, que determina las especies y subespecies de flora y fauna silvestres terrestres y acuáticas en peligro de extinción, amenazadas, raras y las sujetas a protección especial, y que establece especificaciones para su protección. Diario Oficial de la Federación. 16 de Mayo 1994. Diario Oficial de la Federación, Mexico City.

    Semarnat (2000) Acuerdo que tiene por objeto dotar con una categoría acorde con la legislación vigente a las superficies que fueron objeto de diversas declaratorias de áreas naturales protegidas emitidas por el Ejecutivo Federal. 7 de Junio 2000. Diario Oficial de la Federación, Mexico City.

    Semarnat (2002) Norma Oficial Mexicana NOM-059-SEMARNAT-2001. Protección ambiental - especies nativas de México de flora y fauna silvestres - categorías de riesgo y especificaciones para su inclusión, exclusión o cambio- lista de especies en riesgo. Diario Oficial de la Federación. 6 de Marzo 2002. Diario Oficial de la Federación, Mexico City.

    Smith, M.F. (1998) Phylogenetic relationships and geographic structure in pocket gophers in the genus Thomomys. Molecular Phylogenetics and Evolution, 9, 1–14.

    Swofford, D.L. (2002) PAUP*: Phylogenetic Analysis Using Parsimony (* and other methods), ver 4.0b10. Sinauer, Sunderland, Massachusetts, USA.

    Wilcox, B.A. (1978) Supersaturated island faunas: a species-age relationship for lizards on postpleistocene land-bridge island. Science, 199, 996–998.