Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2017-03-10
Page range: 313–343
Abstract views: 110
PDF downloaded: 1

Phylogenetic analysis of the Neotropical Pristimantis leptolophus species group (Anura: Craugastoridae): molecular approach and description of a new polymorphic species 

Grupo Herpetológico de Antioquia, Instituto de Biología, Universidad de Antioquia, Calle 67 # 53–108, Bloque 7–121, A.A. 1226, Medellín, Colombia
Grupo Herpetológico de Antioquia, Instituto de Biología, Universidad de Antioquia, Calle 67 # 53–108, Bloque 7–121, A.A. 1226, Medellín, Colombia
Grupo Herpetológico de Antioquia, Instituto de Biología, Universidad de Antioquia, Calle 67 # 53–108, Bloque 7–121, A.A. 1226, Medellín, Colombia
Amphibia Antioquia Brachycephaloidea Cordillera Central molecular phylogenetics morphology Páramo de Sonsón

Abstract

Pristimantis, distributed throughout the New World tropics, is the most speciose vertebrate genus. Pristimantis presents an enormous morphological diversity and is currently divided into several demonstrably non-monophyletic phenetic species groups. With the purpose of increasing our understanding of Pristimantis systematics, we present the first phylogenetic analysis using molecular evidence to test the monophyly and infer evolutionary relationships within the Pristimantis leptolophus group, an endemic group of frogs from the highlands of the Colombian Andes. Our phylogenetic reconstruction recovers the group as monophyletic with high support, indicating general concordance between molecular data and morphological data. In addition, we describe a new polymorphic species lacking conspicuous tubercles, a regular attribute among species of the P. leptolophus species group and endemic from the Páramo de Sonsón complex (Antioquia, Colombia). The phylogenetic position of the new species is inferred and other systematic implications in the light of our results are discussed.

 

References

  1. Acosta-Galvis, A.R. (2015) Una nueva especie del género Pristimantis (Anura: Craugastoridae) del complejo de páramos Merchán-Iguaque (Boyacá, Colombia). Biota Colombiana, 16, 107–127.

    Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973.
    https://doi.org/10.1093/molbev/mss075

    Duellman, W.E. & Lehr, E. (2009) Terrestrial breeding frogs (Strabomantidae) in Peru. NTV Science, Münster, 382 pp.

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplication of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    Frost, D.R. (2016) Amphibian Species of the World: an Online Reference. Version 6.0. American Museum of Natural History, New York, USA. Available from: http://research.amnh.org/herpetology/amphibia/index.php (accessed 30 October 2016)

    García-R, J.C., Crawford, A.J., Mendoza, Á.M., Ospina, O., Cardenas, H. & Castro, F. (2012) Comparative Phylogeography of Direct-Developing Frogs (Anura: Craugastoridae: Pristimantis) in the Southern Andes of Colombia. PLOS ONE, 7 (9), e46077
    https://doi.org/10.1371/journal.pone.0046077

    González-Durán, G.A. (2016) A new small frog species of the genus Pristimantis (Anura: Craugastoridae) from the northern paramos of Colombia. Zootaxa, 4066 (4), 421–437.
    https://doi.org/10.11646/zootaxa.4066.4.4

    Guayasamin, J.M., Krynak, T., Krynak, K., Culebras, J. & Hutter, C.R. (2015) Phenotypic plasticity raises questions for taxonomically important traits: a remarkable new Andean rainfrog (Pristimantis) with the ability to change skin texture. Zoological Journal of the Linnean Society, 173, 913–928.
    https://doi.org/10.1111/zoj.12222

    Hedges, S.B., Duellman, W.E. & Heinicke, M.P. (2008) New World direct-developing frogs (Anura: Terrarana): Molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737, 1–182.

    Heinicke, M.P., Duellman, W.E. & Hedges, S.B. (2007) Major Caribbean and Central American frog faunas originated by ancient oceanic dispersal. Proceedings of the National Academy of Sciences of the United States of America, 104, 10092–10097.
    https://doi.org/10.1073/pnas.0611051104

    Heinicke, M.P., Barrio-Amorós, C.L. & Hedges, S.B. (2015) Molecular and morphological data support recognition of a new genus of New World direct-developing frog (Anura: Terrarana) from an under-sampled region of South America. Zootaxa, 3986 (2), 151–172.
    https://doi.org/10.11646/zootaxa.3986.2.1

    Katoh, S. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.
    https://doi.org/10.1093/molbev/mst010

    Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Mentjies, P. & Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647–1649.
    https://doi.org/10.1093/bioinformatics/bts199

    Lanfear, R., Calcott, B., Ho, S.Y.W. & Guindon, S. (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29, 1695–1701.
    https://doi.org/10.1093/molbev/mss020

    Lynch, J.D. (1972) Two new species of frogs (Eleutherodactylus: Leptodactylidae) from the paramos of northern Ecuador. Herpetologica, 28,141–147.

    Lynch, J.D. (1976) New species of frogs (Leptodactylidae: Eleutherodactylus) from the Pacific versant of Ecuador. Occasional Papers of the Museum of Natural History, University of Kansas, 55, 1–33.

    Lynch, J.D. (1979) Leptodactylid frogs of the genus Eleutherodactylus from the Andes of southern Ecuador. Miscellaneous Publication. Museum of Natural History, University of Kansas, 66, 1–62.

    Lynch, J.D. (1980) Systematic status and distribution of some poorly known frogs of the genus Eleutherodactylus from the Chocoan lowlands of South America. Herpetologica, 36, 175–189.

    Lynch, J.D. (1980) New species of Eleutherodactylus of Colombia (Amphibia: Leptodactylidae). I: Five new species from the paramos of the Cordillera Central. Caldasia, 13, 165–188.

    Lynch, J.D. (1991) New diminutive Eleutherodactylus from the Cordillera Central of Colombia (Amphibia: Leptodactylidae). Journal of Herpetology, 25, 344–352.
    https://doi.org/10.2307/1564595

    Lynch, J.D. (1995) Three new species of Eleutherodactylus (Amphibia: Leptodactylidae) from the paramos of the Cordillera Occidental of Colombia. Journal of Herpetology, 29, 513–521.
    https://doi.org/10.2307/1564734

    Lynch, J.D. (1999). Ranas pequeñas, la geometría de evolución, y la especiación en los Andes Colombianos. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 23, 143–159.

    Lynch, J.D. (2001) Three new rainfrogs of the Eleutherodactylus diastema group from Colombia and Panama. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 25, 287–297.

    Lynch, J.D. (2003) New species of frogs (Eleutherodactylus: Leptodactylidae) from the Cordillera Oriental of Norte de Santander and Santander, Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 27, 449–460.

    Lynch, J.D. & Ruiz-Carranza, P.M. (1983) New frogs of the genus Eleutherodactylus from the Andes of southern Colombia. Transactions of the Kansas Academy of Science, 86, 99–112.
    https://doi.org/10.2307/3628163

    Lynch, J.D. (1986) Origins of the high Andean herpetological fauna. In: Vuilleumier, F. & Monasterio, M. (Eds.), High Altitude Tropical Biology. Oxford University Press, New York, pp. 478–499.

    Lynch, J.D. & Duellman, W.E. (1997) Frogs of the genus Eleutherodactylus (Leptodactylidae) in western Ecuador: Systematics, Ecology, and Biogeography. Natural History Museum, University of Kansas, Lawrence, Kansas, 236 pp.
    https://doi.org/10.5962/bhl.title.7951

    Lynch, J.D. & Rueda-Almonacid, J.V. (1998) New frogs of the genus Eleutherodactylus from the eastern flank of the northern Cordillera Central of Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 22, 561–570.

    Lynch, J.D. & Suárez-Mayorga, A. (2002). Análisis biogeográfico de los anfibios paramunos. Caldasia, 24, 471–480.

    Lynch, J.D., Ruiz-Carranza, P.M. & Ardila-Robayo, M.C. (1997) Biogeographic patterns of colombian frogs and toads. Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 21, 237–248.

    Minh, B.Q., Nguyen, M.A.T. & von Haeseler, A. (2013) Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30, 1188–1195.
    https://doi.org/10.1093/molbev/mst024

    Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274.
    https://doi.org/10.1093/molbev/msu300

    Ortega-Andrade, H.M., Rojas-Soto, O.R., Valencia, J.H., Espinosa de los Monteros, A., Morrone, J.J., Ron, S.R. & Cannatella, D.C. (2015) Insights from Integrative Systematics Reveal Cryptic Diversity in Pristimantis Frogs (Anura: Craugastoridae) from the Upper Amazon Basin. PLoS ONE, 10, e0143392.
    https://doi.org/10.1371/journal.pone.0143392

    Padial J.M., Gagliardi-Urrutia, G., Chaparro J.C., & Gutierrez, R.C. (2016) A new species of the Pristimantis conspicillatus group from the Peruvian Amazon. Annals of the Carnegie Museum, 83, 207–218.

    Padial, J., Grant, T. & Frost, D. (2014) Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria. Zootaxa, 3825 (1), 1–132.
    https://doi.org/10.11646/zootaxa.3825.1.1

    Pinto-Sánchez, N.R., Ibáñez, R., Madriñán, S., Sanjur, O.I., Bermingham, E. & Crawford, A.J. (2012) The Great American Biotic Interchange in frogs: Multiple and early colonization of Central America by the South American genus Pristimantis (Anura: Craugastoridae). Molecular Phylogenetics and Evolution, 62, 954–972.
    https://doi.org/10.1016/j.ympev.2011.11.022

    Rambaut, A. & Drummond, A.J. (2007) Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 7 February 2017)

    Rivera-Correa, M. & Daza, J.M. (2016) Molecular phylogenetics of the Pristimanstis lacrimosus species group (Anura: Craugastoridae) with the description of a new species from Colombia. Acta Herpetologica, 11, 31–45

    Rivera-Correa, M., LaMadrid, F. & Crawford, A. (2016) A new small golden frog of the genus Pristimantis (Anura: Craugastoridae) from Andean cloud forest of Colombia. Amphibia-Reptilia, 37, 153–166
    https://doi.org/10.1163/15685381-00003037

    Rivera-Prieto, D.A., Rivera-Correa, M. & Daza, J.M. (2014) A new colorful species of Pristimantis (Anura: Craugastoridae) from the eastern flank of the Cordillera Central in Colombia. Zootaxa, 3900 (2), 223–242.
    https://doi.org/10.11646/zootaxa.3900.2.3

    Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542.
    https://doi.org/10.1093/sysbio/sys029

    Rosenberg, N.A. (2007) Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution, 61, 317–323.
    https://doi.org/10.1111/j.1558-5646.2007.00023.x

    Santos, J.C., Coloma, L.A. & Cannatella, D.C. (2003) Multiple, recurring origins of aposematism and diet specialization in poison frogs. Proceedings of the National Academy of Sciences of the United States of America, 100, 12792–12797.
    https://doi.org/10.1073/pnas.2133521100

    Shepack, A., von May, R., Tito, A. & Catenazzi, A. (2016) A new species of Pristimantis (Amphibia, Anura, Craugastoridae) from the foothills of the Andes in Manu National Park, southeastern Peru. ZooKeys, 594, 143–164.
    https://doi.org/10.3897/zookeys.594.8295

    Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313.
    https://doi.org/10.1093/bioinformatics/btu033

    Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular and Biology Evolution, 30, 2725–2729.
    https://doi.org/10.1093/molbev/mst197

    Vinh, L.S. & von Haeseler, A. (2004) IQPNNI: Moving fast through tree space and stopping in time. Molecular Biology and Evolution, 21, 1565–1571.
    https://doi.org/10.1093/molbev/msh176

    Wägele, H., Klussmann-Kolb, A., Kuhlmann, M., Haszprunar, G., Lindberg, G., Koch, A. & Wägele, J.W. (2011) The taxonomist—an endangered race. A practical proposal for its survival. Frontiers in Zoology, 8, 25.
    https://doi.org/10.1186/1742-9994-8-25