Skip to main content Skip to main navigation menu Skip to site footer
Responsive image
Issue: Vol. 4268 No. 1: 15 May 2017
Type: Article
Published: 2017-05-15
DOI: 10.11646/zootaxa.4268.1.6
Page range: 101–116
Abstract views: 108
PDF downloaded: 1

Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007  (Gryllidae: Eneopterinae: Lebinthini)

College of Life Sciences, Shaanxi Normal University, 710062, Xi’an, P.R. China. Muséum national d'Histoire naturelle, Institut de Systématique, Evolution et Biodiversité ISYEB, UMR 7205 CNRS MNHN UPMC EPHE CP 50 (Entomologie), Sorbonne Universités, 75231 Paris Cedex 05, France.
Muséum national d'Histoire naturelle, Institut de Systématique, Evolution et Biodiversité ISYEB, UMR 7205 CNRS MNHN UPMC EPHE CP 50 (Entomologie), Sorbonne Universités, 75231 Paris Cedex 05, France. Universidade Federal de Viçosa, Departamento de Biologia Animal. Av. PH Rolfs s/n. Viçosa, Minas Gerais, Brazil. CEP 36570-900.
Muséum national d'Histoire naturelle, Institut de Systématique, Evolution et Biodiversité ISYEB, UMR 7205 CNRS MNHN UPMC EPHE CP 50 (Entomologie), Sorbonne Universités, 75231 Paris Cedex 05, France.
Division of Zoology, RC–Biology, Cibinong Science Center – LIPI, Jl. Raya Jakarta- Bogor Km. 46, Cibinong, 16911 Indonesia.
Muséum national d'Histoire naturelle, Institut de Systématique, Evolution et Biodiversité ISYEB, UMR 7205 CNRS MNHN UPMC EPHE CP 50 (Entomologie), Sorbonne Universités, 75231 Paris Cedex 05, France.
Muséum national d'Histoire naturelle, Institut de Systématique, Evolution et Biodiversité ISYEB, UMR 7205 CNRS MNHN UPMC EPHE CP 50 (Entomologie), Sorbonne Universités, 75231 Paris Cedex 05, France.
mitogenome long-PCR approach next generation sequencing technology New Guinea Indonesia Orthoptera

Abstract

In the present study, we report the high-coverage complete mitochondrial genome (mitogenome) of the cricket Cardiodactylus muiri Otte, 2007. The mitogenome was sequenced using a long-PCR approach on an Ion Torrent Personal Genome Machine (PGM) for next generation sequencing technology. The total length of the amplified mitogenome is 16,328 bp, representing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one noncoding region (D-loop region). The new sets of long-PCR primers reported here are invaluable resources for future comparative evolutionary genomic studies in Orthopteran insects. The new mitogenome sequence is compared with published cricket mitogenomes. In the taxonomic part, we present new records for the species and describe life-history traits, habitat and male calling song of the species; based on observation of new material, the species Cardiodactylus buru Gorochov & Robillard, 2014 is synonymized under C. muiri.

References

  1. Bernt, M., Donath, A., Juhling, F., Externbrink, F., Florentz, C., Fritzsch, G., Putz, J., Middendorf, M. & Stadler, P.F. (2013) MITOS: Improved de novo metazoan mitochondrial genome annotation. Molecular Phylogenetics and Evolution, 69, 313–319.
    https://doi.org/10.1016/j.ympev.2012.08.023

    Chintauan-Marquier, I.C., Legendre, F., Hugel, S., Robillard, T., Grandcolas, P., Nel, A., Zuccon, D. & Desutter-Grandcolas, L. (2016) Laying the foundations of evolutionary and systematic studies in crickets (Insecta, Orthoptera): a multilocus phylogenetic analysis. Cladistics, 32 (1), 54–81.
    https://doi.org/10.1111/cla.12114

    Cameron, S.L. (2014) Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny. Annual Review of Entomology, 59, 95–117.
    https://doi.org/10.1146/annurev-ento-011613-162007

    Crampton-Platt, A., Yu, D.W., Zhou, X. & Vogler, A.P. (2016) Mitochondrial metagenomics: letting the genes out of the bottle. Gigascience, 5, 15.
    https://doi.org/10.1186/s13742-016-0120-y

    Crampton-Platt, A., Timmermans, M.J., Gimmel, M.L., Kutty, S.N., Cockerill, T.D., Vun Khen, C. & Vogler, A.P. (2015) Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample. Molecular Biology and Evolution, 32, 2302–2316.
    https://doi.org/10.1093/molbev/msv111

    Gomez-Rodriguez, C., Crampton-Platt, A., Timmermans, M.J.T.N., Baselga, A. & Vogler, A.P. (2015) Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages. Methods in Ecology and Evolution, 6, 883–894.
    https://doi.org/10.1111/2041-210X.12376

    Hinsinger, D.D., Debruyne, R., Thomas, M., Denys, G.P.J., Mennesson, M., Utage, J. & Dettai, A. (2015) Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms. DNA Barcodes, 3, 170–186.
    https://doi.org/10.1515/dna-2015-0019

    Jia, H.Y., Guo, Y.F., Zhao, W.W. & Wang, K. (2014) Long-range PCR in next-generation sequencing: comparison of six enzymes and evaluation on the MiSeq sequencer. Scientific Reports, 4, 5737.
    https://doi.org/10.1038/srep05737

    Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Mentjies, P. & Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28 (12), 1647–1649.
    https://doi.org/10.1093/bioinformatics/bts199

    Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution, 33, 1870–1874.
    https://doi.org/10.1093/molbev/msw054

    Konstantinov, Y.M., Dietrich, A., Weber-Lotfi, F., Ibrahim, N., Klimenko, E.S., Tarasenko, V.I., Bolotova, T.A. & Koulintchenko, M.V. (2016) DNA import into mitochondria. Biochemistry (Moscow), 81, 1044–1056.
    https://doi.org/10.1134/S0006297916100035

    Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies. Molecular Biology and Evolution, 32, 268–274.
    https://doi.org/10.1093/molbev/msu300

    Ragge, D.R. & Reynolds, W.J. (1998) The songs of the grasshoppers and crickets of Western Europe. Harley Books, Colchester, 600 pp.

    Robillard, T. & Desutter-Grandcolas, L. (2004a) High-frequency calling in Eneopterinae crickets (Orthoptera, Grylloidea, Eneopteridae): adaptive radiation revealed by phylogenetic analysis. Biological Journal of the Linnean Society, 83, 577–584.

    Robillard, T. & Desutter-Grandcolas, L. (2004b) Phylogeny and the modalities of acoustic diversification in extant Eneopterinae (Insecta, Orthoptera, Grylloidea, Eneopteridae). Cladistics, 20, 271–293.

    Robillard, T., ter Hofstede, H.M., Orivel, J. & Vicente, N.M. (2015) Bioacoustics of the Neotropical Eneopterinae (Orthoptera, Grylloidea, Gryllidae). Bioacoustics-the International Journal of Animal Sound and Its Recording, 24, 123–143.
    https://doi.org/10.1080/09524622.2014.996915

    Robillard, T. Gorochov, A.V., Poulain, S. & Suhardjono, Y.R. (2014) Revision of the cricket genus Cardiodactylus (Orthoptera, Eneopterinae, Lebinthini): the species from both sides of the Wallace line, with description of 25 new species. Zootaxa, 3854 (1), 1–104.
    https://doi.org/10.11646/zootaxa.3854.1.1

    Robillard, T., Montealegre-Z, F., Desutter-Grandcolas, L., Grandcolas, P. & Robert, D. (2013) Mechanisms of high-frequency song generation in brachypterous crickets and the role of ghost frequencies. Journal of Experimental Biology, 216, 2001–2011.
    https://doi.org/10.1242/jeb.083964

    Schattner, P., Brooks, A.N. & Lowe, T.M. (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Research, 33, 686–689. [W686–689]
    https://doi.org/10.1093/nar/gki366

    Simon, C., Buckley, T.R., Frati, F., Stewart, J.B. & Beckenbach, A.T. (2006) Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics, 37, 545–579.
    https://doi.org/10.1146/annurev.ecolsys.37.091305.110018

    Specht R. (2009) Avisoft-SASLab Pro: Sound Analysis and Synthesis Laboratory. Avisoft Bioacoustics, Berlin. [software]

    Song, H.J., Amedegnato, C., Cigliano, M.M., Desutter-Grandcolas, L., Heads, S.W., Huang, Y., Otte, D. & Whiting, M.F. (2015) 300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling. Cladistics, 31, 621–651.
    https://doi.org/10.1111/cla.12116

    ter Hofstede, H.M., Schoneich, S., Robillard, T. & Hedwig, B. (2015) Evolution of a Communication System by Sensory Exploitation of Startle Behavior. Current Biology, 25, 3245–3252.
    https://doi.org/10.1016/j.cub.2015.10.064

    Wolff, J.N., Shearman, D.C., Brooks, R.C. & Ballard, J.W. (2012) Selective enrichment and sequencing of whole mitochondrial genomes in the presence of nuclear encoded mitochondrial pseudogenes (numts). PLoS One, 7, e37142.
    https://doi.org/10.1371/journal.pone.0037142

    Yang, J., Ren, Q. & Huang, Y. (2016a) Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes. Zootaxa, 4092, 529–547.

    Yang, J., Ye, F. & Huang, Y. (2016b) Mitochondrial genomes of four katydids (Orthoptera: Phaneropteridae): New gene rearrangements and their phylogenetic implications. Gene, 575, 702–711.

    Zhou, J.X., Jia, Y.C., Yang, X.C. & Li, Q. (2015) The complete mitochondrial genome of the black field cricket, Teleogryllus oceanicus. Mitochondrial DNA, 2015, 1–2.

    Zhou, Z., Ye, H., Huang, Y. & Shi, F. (2010) The phylogeny of Orthoptera inferred from mtDNA and description of Elimaea cheni (Tettigoniidae: Phaneropterinae) mitogenome. Journal of Genetics and Genomics, 37, 315–324.
    https://doi.org/10.1016/S1673-8527(09)60049-7