Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2020-09-10
Page range: 371–385
Abstract views: 81
PDF downloaded: 3

Molecular phylogeny of Diphtherophora de Man, 1880 (Nematoda: Diphtherophoridae), with description of a new species

Department of Plant Protection, School of Agriculture, Shiraz University, 71441-65186, Shiraz, Iran
Department of Plant Protection, School of Agriculture, Shiraz University, 71441-65186, Shiraz, Iran
Department of Plant Protection, School of Agriculture, Shiraz University, 71441-65186, Shiraz, Iran
Department of Nematology, University of California, Riverside, 900 University Avenue, Riverside, CA 92521, USA Present address: Department of Marine Sciences, University of Georgia, 325 Sanford Drive, Athens, GA 30602, USA.
Nematoda Diphtherophora eldarica n. sp. morphology taxonomy 28S rRNA

Abstract

The poorly-known nematodes of the genus Diphtherophora are soil inhabitants often found in the vicinity of plant roots. In the present study, we characterize a new species belonging to the genus Diphtherophora, named D. eldarica n. sp., from Iran using both morphological and molecular approaches. The new species is characterized by striated cuticle at the anterior end of the body, head offset from the body contour, spear 15–17 µm in length, rod-shaped sperm, overhanging cuticle on the anterior lip of the anus, and a conical tail bent dorsally near the terminus. Diphterophora eldarica n. sp. also lacks ventromedian neck papillae whereas male specimens bear two precloacal ventromedian supplements at the level of the spicules. Additionally, we provide morphological and molecular data for four known Diphtherophora species including D. geraerti, D. caudata, D. perplexans, and D. tenera collected from soils of different plants and localities in Iran. Using the D2–D3 expansion segments of the 28S ribosomal (rRNA) gene including D. eldarica n. sp. and additional known species from Iran, we explore for the first time species relationships in the genus Diphtherophora within a molecular phylogenetic framework. Our results support: 1) the monophyly of the genus Diphtherophora with respect to the outgroup taxa (Tylolaimophorus and representatives of Trichodoridae), 2) the existence of six strongly supported clades within Diphtherophora, and 3) a sister relationship between D. eldarica n. sp. and a clade formed by D. perplexans and Diphtherophora sp. from the USA. Finally, this study emphasizes the diversity of the genus Diphtherophora in Iran.

 

References

  1. Atighi, M.R., Pourjam, E., Pereira, T.J., Okhovvat, S.M., Alizada, B.A., Mundo-Ocampo, M. & Baldwin, J.G. (2013) Redescription of Filenchus annulatus (Siddiqui & Khan, 1983) Siddiqi, 1986 based on specimens from Iran with contributions to the molecular phylogeny of the Tylenchidae. Nematology, 15, 129–141.

    https://doi.org/10.1163/156854112X649819

    Bastian, H.C. (1865) Monograph on the Anguillulidae. Transactions of the Linnean Society of London, 25, 73–184.

    https://doi.org/10.1111/j.1096-3642.1865.tb00179.x

    Bongers, T. & Bongers, M. (1998) Functional diversity of nematodes. Applied Soil Ecology, 10, 239–251.

    https://doi.org/10.1016/S0929-1393(98)00123-1

    Brzeski, M. W. (1963) Nematode genera of the family Tripylidae (Nematoda, Enoplida). Acta Zoologica Cracoviensia, 8, 295–308.

    Cobb, N.A. (1913) New nematode genera found inhabiting freshwater and non-brackish soils. Journal of the Washington Academy of Sciences, 3, 432–444.

    https://doi.org/10.5962/bhl.part.20323

    Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature methods, 9, 772.

    https://doi.org/10.1038/nmeth.2109

    de Grisse, A. (1969) Redescription ou modification de quelques techniques utilisees dans Ľetude des nematodes phytoparasitaires. Mededelingen van de Rijksfaculteit der Landbouwwetenschappen Gent, 34, 351–369.

    de Ley, P., Felix, M.A., Frisse, L.M., Nadler, S.A., Sternberg, P.W. & Thomas, W.K. (1999) Molecular and morphological characterisation of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae). Nematology, 1, 591–612.

    https://doi.org/10.1163/156854199508559

    de Man, J.G. (1876) [Onderzoekingen over vrij in de aarde levepde Nematoden]. Tijdschrift Nederland Dierk Vereen, 2, 78–196. [in Dutch]

    de Man, J.G. (1880) Die Einheimischen, frei in der reinen Erde und im süssen Wasser lebende Nematoden [Free-living soil and freshwater nematodes]. Monographisch Bearbeitet. Tijdschrift der Nederlandsche dierk undige Vereniging, 5, 1–104. [in German]

    Eroshenko, A.S. & Tepljakov, A.A. (1977) Nematody fauny lesov Dal’neva Vostoka semeistva Diphtherophoridae. Trudy Biologopochvennova Instituta Novaya Seriya, 47, 21–34.

    Gerlach, S.A. & Riemann, F. (1974) The Bremerhaven checklist of aquatic nematodes. A catalogue of Nematoda Adenophorea excluding the Dorylaimida. Part 2. Veröffentlichungen des Instituts für Meeresforschung in Bremerhaven, Supplement 4, 405–736.

    Ghaderi, R. & Asghari, R. (2019) A monograph of the genus Diphtherophora (Nematoda: Diphtherophoridae). Scholars Press, Riga, 118 pp.

    Ghaderi, R., Kashi, L., Mirbabaei Karani, H. & Karegar, A. (2017) A new and four known species of Diphtherophora (Nematoda: Diphtherophoridae) from Iran, with a diagnostic compendium of its species. Zootaxa, 4365 (3), 311–330.

    https://doi.org/10.11646/zootaxa.4365.3.3

    Goodey, T. (1951) Soil and freshwater nematodes. Methuen, London, 390 pp.

    https://doi.org/10.1097/00010694-195107000-00019

    Holterman, M., Karegar, A., Mooijman, P., van Megen, H., van den Elsen, S., Vervoort, M.T., Quist, C.W., Karssen, G., Decraemer, W., Opperman, C.H., Bird, D.M., Kammenga, J., Goverse, A., Smant, G. & Helder, J. (2017) Disparate gain and loss of parasitic abilities among nematode lineages. PLOS ONE, 12, e0185445.

    https://doi.org/10.1371/journal.pone.0185445

    Holovachov, O. & Shoshin, A. (2013) Order Triplonchida Cobb, 1919. In: Schmidt-Rhaesa, A. (Ed.), Handbook of Zoology, A Natural History of the Phyla of the Animal Kingdom. De Gruyter, Berlin, pp. 251–276.

    https://doi.org/10.1515/9783110274257.251

    Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755.

    https://doi.org/10.1093/bioinformatics/17.8.754

    Ivanova, T.S. (1958) [Soil nematodes of the genus Diphtherophora of the fauna of U.S.S.R.]. Theses of report 8-12 December, 1958, All Union belminth Society of Moscow, 1958, 55–56. [in Russian]

    Ivanova, T. (1961) [Revision of the genus Diphtherophora de Man, 1880 (Nematoda: Diphtherophoridae)]. Trudi Instituta Zoologii i Parazitologii Akademiya Nauk Tadzhikskoi SSR, 20, 21–34. [in Russian]

    Ivanova, T.S. (1977) [Root and virus-vector nematodes of the suborder Diphtherophorina]. Opredeliteli nematod rastenii, pochvy i nasekomykh, 4, 1–93. [In Russian].

    Ivanova, T.S. (1980) [Two new species of nematodes from the family Diphtherophoridae (Micoletzky, 1922) Clark, 1961]. Izvestiya Akademii Nauk Tadzhikskoi SSR, Biologicheskii Nauki, 4, 94–97. [In Russian]

    Katoh, K. & Standley, D.M. (2013) MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.

    https://doi.org/10.1093/molbev/mst010

    Mahmood, M., Li, Q., Keshari, A. & Liang, W. (2015) Sino-Indian nematodes. Descriptions of Diphtherophora chinensis sp. n., Aphelenchoides brevicauda sp. n. and Diplogastrellus latigubernacula sp. n. International Journal of Nematology, 25, 90–95.

    Micoletzky, H. (1922) Die Freilebenden Erd-Nematoden [Soil free-living nematodes]. Archiv für Naturgeschichte, Berlin, A87 (1921), 1–650. [in German]

    Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) “Creating the CIPRES Science Gateway for inference of large phylogenetic trees”. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, Louisiana, 14 November 2010, 1–8.

    https://doi.org/10.1109/GCE.2010.5676129

    Nedelchev, S. & Choleva, B.M. (1989) Two new species of Diphtherophora (Diphtherophoridae, Nematoda) from Bulgaria. Nematologia Mediterranea, 17, 7–10.

    Nedelchev, S. & s’Jacob, J.J. (1993) Two new species of Diphtherophora (diphtherophoridae, Nematoda). Nematologia Mediteranea, 21, 291–294.

    Paesler, V.F. (1955) Tylolaimophorus rotundicauda n. sp. Beschreibung einer in Massen auftretenden Tylolaimophorusart im saftflub von Juglans regia samt eingen Bemerkungen über die Nematodensukzession [Tylolaimophorus rotundicauda n. sp. description of a mass-occurring Tylolaimophorus in the extracts of Juglans regia, including some remarks on the nematode succession]. Zoologischer Anzeiger, 154, 241–244. [in German]

    Pereira, T.J., Qing, X., Chang, K. F., Mundo-Ocampo, M., Cares, J.E., Ragsdale, E.J., Nguyen, C.N. & Baldwin, J.G. (2017) Phylogeny and biogeography of the genus Cephalenchus (Tylenchomorpha, Nematoda). Zoologica Scripta, 46, 506–520.

    https://doi.org/10.1111/zsc.12225

    Quist, C.W., Smant, G. & Helder, J. (2015) Evolution of plant parasitism in the phylum Nematoda. Annual Review of Phytopathology, 53, 289–310.

    https://doi.org/10.1146/annurev-phyto-080614-120057

    Rambaut, A. (2009) FigTree. Version 1.4.4. Available from: http://tree.bio.ed.ac.uk (accessed 10 March 2019)

    Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688–2690.

    https://doi.org/10.1093/bioinformatics/btl446

    Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313.

    https://doi.org/10.1093/bioinformatics/btu033

    Subbotin, S.A., Sturhan, D., Chizhov, V.N., Vovlas, N. & Baldwin, J.G. (2006) Phylogenetic analysis of Tylenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences. Nematology, 8, 455–474.

    https://doi.org/10.1163/156854106778493420

    Tanha Maafi, Z., Subbotin, S.A. & Moens, M. (2003) Molecular identification of cyst-forming nematodes (Heteroderidae) from Iran and a phylogeny based on ITS-rDNA sequences. Nematology, 5, 99–111.

    https://doi.org/10.1163/156854102765216731

    Thorne, G. (1935) Notes on free-living and plant parasitic nematodes. II. Higher classification groups of Dorylaimoidea. Proceedings of the Helminthological Society of Washington, 2, 96–98.

    Thorne, G. (1939) A monograph of the nematodes of the superfamily Dorylaimoidea. Capita Zoologica, 8, 1–263.

    Thorne, G. (1961) Principles of Nematology. McGraw-Hill Book Co., New York, Toronto and London, 553 pp.

    Van der Linde, W.J. (1938) A contribution to the study of nematodes. Entomology Mem of Department of Agriculture and Forestry, Union of South Africa, 2, 1–40.

    Van Megen, H., van den Elsen, S., Holterman, M., Karssen, G., Mooyman, P., Bongers, T., Holovachov, O., Bakker, J. & Helder, J. (2009) A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology, 11, 927–950.

    https://doi.org/10.1163/156854109X456862

    Whitehead, A.G. & Hemming, J.R. (1965) A comparison of some quantitative methods of extracting small vermiform nematodes from soil. Annual Applied Biology, 55, 25–38.

    https://doi.org/10.1111/j.1744-7348.1965.tb07864.x

    Yeates, G. (1967) Studies on nematodes from dune sands. 4. Diphtherophoroidea. New Zealand Journal of Science, 10, 322–329.

    Zhao, Z.Q. (2011) A review of the genus Trischistoma Cobb, 1913 (Nematoda: Enoplida), with descriptions of four new species from New Zealand. Zootaxa, 3045 (1), 1–25.

    https://doi.org/10.11646/zootaxa.3045.1.1