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Type: Article
Published: 2020-12-04
Page range: 451–472
Abstract views: 93
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First partial mitogenome of a new Seira Lubbock species (Collembola,
Entomobryidae, Seirinae) from Cambodia reveals a possible separate
lineage from the Neotropical Seirinae

Department of Entomology, College of Plant Protection, Nanjing Agricultural University, 210095, Nanjing, China.
Department of Entomology, College of Plant Protection, Nanjing Agricultural University, 210095, Nanjing, China.
2Laboratório de Sistemática e Ecologia de Invertebrados do Solo, Instituto Nacional de Pesquisas da Amazônia—INPA, CPEN. Avenida André Araújo, 2936, Aleixo, CEP 69067-375, Manaus, AM, Brazil.
Collembola chaetotaxy mitogenome assembly phylogeny Koh Rong Sanloem Southeast Asia

Abstract

A new species of Seira from Koh Rong Sanloem Island, Cambodia, as well as its mitochondrial genome information, are herein described. Seira sanloemensis sp. nov. has a similar colour pattern compared to nine other species of Seira worldwide distributed, but the dorsal chaetotaxy is more similar to S. arunachala Mitra from India, S. camgiangensis Nguyễn from Vietnam, and S. gobalezai Christiansen & Bellinger from Hawaii. However, the new species differs from these species by dorsal chaetotaxy of head, Th II–III and Abd II, collophore chaetotaxy, and morphology of the empodial complex. This is the third Collembola species described for Cambodia. Its assembled incomplete mitogenome from MGI reads, has a length of 13,953 bp, and contains all protein-coding genes except for tree tRNAs missing; the gene order is the same of the Pancrustacean ancestral gene order. Based on the alignment of the 13 coding genes, a maximum likelihood phylogenetic tree of medium bootstrap values suggested that the Asian Seira species can represent a different lineage from the Neotropical Seirinae, but further biogeographic and divergence estimation analyses plus the inclusion of more Asian taxa are necessary to test such hypothesis.

 

References

  1. Arlé, R. (1939) Collembola, anexo N.2, ao relatório da excursão científica do Instituto Oswaldo Cruz realizada na zona da E. F. N. O. B., em outubro de 1938. Boletim Biológico, 4 (2), 295–300.

    Bellinger, P.F., Christiansen, K.A. & Janssens, F. (1996–2020) Checklist of the Collembola of the World. Available from: http://www.collembola.org (accessed 21 August 2020)

    Bellini, B.C. & Zeppelini, D. (2008) A new species of Seira (Collembola: Entomobryidae) from northeastern Brazil. Zoologia, 25, 724–727.

    https://doi.org/10.1590/S0101-81752008000400018

    Bellini, B.C. & Zeppelini, D. (2009a) A new species of Seira Lubbock (Collembola, Entomobryidae), with a key to the species of Paraíba, Brazil. Revista Brasileira de Entomologia, 53, 266–271.

    https://doi.org/10.1590/S0085-56262009000200008

    Bellini, B.C. & Zeppelini, D. (2011) A new species of Seira (Collembola, Entomobryidae, Seirini) from Northeastern Brazilian coastal region. Revista Brasileira de Zoologia, 28, 403–406.

    https://doi.org/10.1590/S1984-46702011000300015

    Bellini, B.C., Fernandes, L.H. & Zeppelini, D. (2010) Two new species of Seira (Collembola, Entomobryidae) from Brazilian coast. Zootaxa, 2448 (1), 53–60.

    https://doi.org/10.11646/zootaxa.2448.1.4

    Bellini, B.C., Pais, A.P. & Zeppelini, D. (2009) A new species of Seira Lubbock (Collembola: Entomobryidae) from Brazil with sexually dimorphic legs. Zootaxa, 2080 (1), 38–46.

    https://doi.org/10.11646/zootaxa.2080.1.3

    Bellini, B.C., Santos, N.M.C., Souza, P.G.C. & Weiner, W.M. (2018) Two new species of Brazilian springtails (Hexapoda: Collembola) with notes on Neotropical Brachystomella Ågren and Seira (Lepidocyrtinus) Börner. Insect Systematics & Evolution, 50 (3), 297–326.

    https://doi.org/10.1163/1876312X-00002192

    Bernard, E.C., Soto-Adames, F.N. & Wynne, J. (2015) Collembola of Rapa Nui (Easter Island) with description of five endemic cave-restricted species. Zootaxa, 3949 (2), 239–267.

    https://doi.org/10.11646/zootaxa.3949.2.6

    Bonet, F. (1930) Sur quelques Collemboles de l'Inde. Eos, 6, 249–273.

    Bonet, F. (1933) Colémbolos de la República Argentina. Eos, 9, 123–194.

    Capella-Gutierrez, S., Silla-Martinez, J.M., Gabaldon, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25, 1972–1973.

    https://doi.org/10.1093/bioinformatics/btp348

    Carapelli, A., Convey, P., Nardi, F. & Frati, F. (2014) The mitochondrial genome of the antarctic springtail Folsomotoma octooculata (Hexapoda: Collembola), and an update on the phylogeny of the collembolan lineages based on mitogenomic data. Entomologia, 2 (190), 46–55.

    https://doi.org/10.4081/entomologia.2014.190

    Carapelli, A., Fanciulli, P.P.P., Frati, F. & Leo, C. (2019) Mitogenomic data to study the taxonomy of Antarctic springtail species (Hexapoda: Collembola) and their adaptation to extreme environments. Polar Biology, 42 (4), 715–732.

    https://doi.org/10.1007/s00300-019-02466-8

    Chen, J.-X. & Christiansen, K.A. (1993) The genus Sinella with special reference to Sinella s. s. (Collembola: Entomobryidae) of China. Oriental Insects, 27, 1–54.

    Christiansen, K.A. & Bellinger, P.F. (1992) Insects of Hawaii. Vol. 15. Collembola. University of Hawaii Press, Honolulu, 445 pp.

    Christiansen, K. & Bellinger, P. (1998) The Collembola of North America. North of Rio Grande, A taxonomy analysis. 2nd Edition. Grinnell College, Iowa, 1520 pp.

    Christiansen, K. & Bellinger, P. (2000) A survey of the genus Seira (Collembola: Entomobryidae) in the Americas. Caribbean Journal of Science, 36, 39–75.

    Cipola, N.G., Morais, J.W. & Bellini, B.C. (2014a) A new species of Seira (Collembola: Entomobryidae: Seirini) from Northern Brazil, with the addition of new chaetotaxic characters. Zoologia, 31, 489–495.

    https://doi.org/10.1590/S1984-46702014000500009

    Cipola, N.G., Morais, J.W. & Bellini, B.C. (2014b) Two new species of Seira Lubbock (Collembola, Entomobryidae, Seirini) from South Brazil. Zootaxa, 3793 (1), 147–164.

    https://doi.org/10.11646/zootaxa.3793.1.7

    Cipola, N.G., Morais, J.W. & Bellini, B.C. (2017) The discovery of Lepidocyrtoides Schött, 1917 (Collembola, Entomobryidae, Entomobryinae) from the New World, including three new species from Brazil and one from Australia. Zootaxa, 4324 (2), 201–248.

    https://doi.org/10.11646/zootaxa.4324.2.2

    Cipola, N.G., Arbea, J., Baquero, E., Jordana, R., Morais, J.W. & Bellini, B.C. (2018) The survey Seira Lubbock, 1870 (Collembola, Entomobryidae, Seirinae) from Iberian Peninsula and Canary Islands, including three new species. Zootaxa, 4458 (1), 1–66.

    https://doi.org/10.11646/zootaxa.4458.1.1

    Deharveng, L., Jantarit, S. & Bedos, A. (2018) Revisiting Lepidonella Yosii (Collembola: Paronellidae): character overview, checklist of world species and reassessment of Pseudoparonella doveri Carpenter. Annales de la Sociét Entomologique de France, 54 (5), 381–400.

    https://doi.org/10.1080/00379271.2018.1507687

    Denis, J.R. (1948). Collemboles d’Indochine recoltes de M. C. N. Dawydoff. Notes d’Entomologie Chinoise, 12, 183–311.

    Dierckxsens, N., Mardulyn, P. & Smits, G. (2016) NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, 45 (4), e18.

    https://doi.org/10.1093/nar/gkw955

    Ding, Y., Yu, D., Guo, W., Li, J. & Zhang, F. (2019) Molecular phylogeny of Entomobrya (Collembola: Entomobryidae) from China: color pattern groups and multiple origins. Insect Science, 26 (3), 587–597.

    https://doi.org/10.1111/1744-7917.12559

    Fjellberg, A. (1999) The Labial Palp in Collembola. Zoologischer Anzeiger, 237, 309–330.

    Gisin, H. (1967) Espèces nouvelles et lignées évolutives de Pseudosinella endogés. Memórias e Estudos do Museu Zoológico da Universidade de Coimbra, 301, 5–25.

    Good, R. (1974) The geography of flowering plants. 4th Edition. Longman Group, London, 574 pp.

    Godeiro, N.N. & Bellini, B.C. (2014) Three new species of Seira Lubbock Collembola, Entomobryidae) from Caatinga Domain, northeastern Brazil. Zootaxa, 3764 (2), 131–151.

    https://doi.org/10.11646/zootaxa.3764.2.2

    Godeiro, N.N. & Bellini, B.C. (2015) Two new species and two detailed chaetotaxy descriptions of Seira (Collembola: Entomobryidae) from Brazil. Zootaxa, 3972 (2), 208–230.

    https://doi.org/10.11646/zootaxa.3972.2.4

    Godeiro, N.N., Pacheco, G., Liu, S., Cipola, N.G., Berbel-Filho, W.M., Zhang, F., Gilbert, M.T.P. & Bellini, B.C. (2020) Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes. Zoologica Scripta, 49 (3), 329–339. https://doi.org/10.1111/zsc.12408

    Goodwin, S., McPherson, J.D. & McCombie, W.R. (2016) Coming of age: ten years of next-generation sequencing technologies. Nature Reviews Genetics, 17 (6), 333.

    https://doi.org/10.1038/nrg.2016.49

    Haas, B.J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P.D., Bowden, J., Couger, M.B., Eccles, D., Li, B., Lieber, M., MacManes, M.D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C.N., Henschel, R., LeDuc, R.D., Friedman, N. & Regev, A. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols, 8 (8), 1494–1512.

    https://doi.org/10.1038/nprot.2013.084

    Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the Ultrafast Bootstrap Approximation. Molecular Biology and Evolution, 35(2), 518–522.

    https://doi.org/10.1093/molbev/msx281

    Hüther, W. (1986) New aspects in taxonomy of Lepidocyrtus (Collembola). In: Dallai, R. (Ed.), 2nd International Seminar on Apterygota, 1986, 61–65.

    Jordana, R., Arbea, J.I., Simón, C. & Luciáñez, M.J. (1997) Fauna Iberica. Vol. 8. Collembola Poduromorpha. Museo Nacional de Ciencias Naturales, Madrid, 807 pp.

    Katz, A.D., Giordano, R., Soto-Adames, F.N. (2015) Operational criteria for cryptic species delimitation when evidence is limited, as exemplified by North American Entomobrya (Collembola: Entomobryidae). Zoological Journal of Linnean Society, 1–23. https://doi.org/10.1111/zoj.12220

    Kottek, M., Grieser, J., Beck, C., Rudolf, B. & Rubel, F. (2006) World Map of the Köppen-Geiger climate classification updated. Meteorologische Zeitschrift, 15 (3), 259–263.

    https://doi.org/10.1127/0941-2948/2006/0130

    Kück, P. & Longo, G.C. (2014) FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies. Frontiers in Zoology, 11(1), 81.

    https://doi.org/10.1186/s12983-014-0081-x

    Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549.

    https://doi.org/10.1093/molbev/msy096

    Leo, C., Carapelli, A., Cicconardi, F., Frati, F. & Nardi, F. (2019) Mitochondrial Genome Diversity in Collembola: Phylogeny, Dating and Gene Order. Diversity, 11 (169), 1–20.

    https://doi.org/10.3390/d11090169

    Letunic, I. & Bork, P. (2019) Interactive Tree of Life (iTOL) v4: recent updates and new developments, Nucleic Acids Research, 47, W256–W259.

    https://doi.org/10.1093/nar/gkz239

    Lubbock, J. (1870) Notes on the Thysanura. Part IV. Transactions of the Linnean Society of London, 27, 277–297.

    https://doi.org/10.1111/j.1096-3642.1870.tb00214.x

    Mari-Mutt, J.A. (1979) A revision of the genus Dicranocentrus Schött (Insecta: Collembola: Entomobryidae). Agricultural Experiment Station Bulletin, 259, 1–79.

    Mari-Mutt, J.A. (1987) Redescription of Seira oceanica Yosii, 1960 (Collembola, Entomobryidae). Journal of Agriculture of the University of Puerto Rico, 71, 331–333.

    https://doi.org/10.46429/jaupr.v71i3.6976

    Meng, G., Li, Y., Yang, C. & Liu, S. (2019) MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Research, 47 (11), e63, 1–7.

    https://doi.org/10.1093/nar/gkz173

    Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Molecular Biology and Evolution, 37 (5), 1530–1534.

    https://doi.org/10.1093/molbev/msaa015

    Mitra, S.K. (1976) Some Collembola from arunachal Pradesh (Entomobryidae). Journal Oriental Insects, 10 (2), 143–149.

    https://doi.org/10.1080/00305316.1976.10434897

    Nguyễn, T.T. (2001) Sáu loài Collembola mới thuộc họ Entomobryidae ðýợc phát hiện ở Việt Nam. Tạp Ch Sinh Học, 23 (1), 21–29.

    Ritter, W. (1911) Neue Thysanuren und Collembolen aus Ceylon und Bombay, gesammelt von Dr. Uzel. Annalen des k.k. Naturhistorischen Hofmuseums, 24, 379–398.

    Schäffer, C. (1896) Die Collembolen der Umgebung von Hamburg und benachtbaren Gebiete. Mitteilungen dem Naturhistorischen Museum, 13, 147−216.

    Song, F., Li, H., Jiang, P., Zhou, X.G., Liu, J.P., Sun, C.H., Vogler, A.P. & Cai, W.Z. (2016) Capturing the phylogeny of Holometabola with mitochondrial genome data and Bayesian site-heterogeneous mixture models. Genome Biology and Evolution, 8, 1411–1426.

    https://doi.org/10.1093/gbe/evw086

    Soto-Adames, F.N. (2002) Molecular phylogeny of the Puerto Rican Lepidocyrtus and Pseudosinella (Hexapoda: Collembola), a validation of Yoshii’s ‘colour pattern species’. Molecular Phylogenetics and Evolution, 25, 27–42.

    https://doi.org/10.1016/S1055-7903(02)00250-6

    Soto-Adames F.N. (2008) Postembryonic development of the dorsal chaetotaxy in Seira dowlingi (Collembola, Entomobryidae); with an analysis of the diagnostic and phylogenetic significance of primary chaetotaxy in Seira. Zootaxa, 1683 (1), 1–31.

    https://doi.org/10.11646/zootaxa.1683.1.1

    Stecher, G., Tamura, K. & Kumar, S. (2020) Molecular Evolutionary Genetics Analysis (MEGA) for macOS. Molecular Biology and Evolution, 37 (4), 1237–1239.

    https://doi.org/10.1093/molbev/msz312

    Sun, X., Yu, D., Xie, Z., Dong, J., Ding, Y., Yao, H. & Greenslade, P. (2020) Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection. PLoS One, 15(4), e0230827, 1–21. https://doi.org/10.1371/journal.pone.0230827

    Szeptycki, A. (1979) Chaetotaxy of the Entomobryidae and its phylogenetical significance. Morpho-systematic studies on Collembola. IV. Polska Akademia Nauk, Kraków, 219 pp.

    Toulson, B., Biddiscombe, S., Bray, R., Hudson, H. & Ivimey-Cook, E. (2014) Expedition Sanloem 2013: Exploring Koh Rong Sanloem’s Hidden Treasures. Ben Toulson, 138 pp. Available from: https://www.expeditionbasecamp.com/expeditionsamloem2013/ (accessed 18 November 2020)

    Wang, Y., Cao, J.J., Li, N., Ma, G.Y. & Li, W.H. (2019) The first mitochondrial genome from Scopuridae (Insecta: Plecoptera) reveals structural features and phylogenetic implications. International Journal of Biological Macromolecules, 122, 893–902.

    https://doi.org/10.1016/j.ijbiomac.2018.11.019

    Wray, D.L. (1953) Some new species of springtail insects (Collembola). Nature Notes, Occasional Papers, 1, 1–7.

    Yoshii, R. (1989) On some Collembola of New Caledonia, with notes on the “colour pattern species. Contributions from the Biological Laboratory of Kyoto University, 27, 233–259.

    Yoshii, R. & Suhardjono, Y.R. (1992) Collembolan fauna of Indonesia and its affinities III: Collembola of Timor Island. Acta Zoologica Asiae Orientalis, 2, 75–96.

    Yosii, R. (1959) Studies on the collembolan fauna of Malay and Singapore, with special reference to the genera: Lobella, Lepidocyrtus and Callyntrura. Contributions from Biological Laboratory of Kyoto University, 10, 20–37.

    Yosii, R. (1960) On some Collembola of New Caledonia, New Britian, and Solomon Islands. Bulletin of the Osaka Museum of Natural History, 12, 9–38.

    Yosii, R. (1961) Phylogenetische Bedeutung der Chaetotaxie bei den Collembolen. Contributions from the Biological Laboratory Kyoto University, 12, 1–37.

    Yosii, R. (1966) Check list of Collembolan species reported from Indonesia. Treubia, 27 (1), 45‒52.

    Yosii, R. (1976) On some Neanurid Collembola of Southeast Asia. Nature and life in southeast Asia, 7, 257–299.

    Zeppelini, D. & Bellini, B.C. (2006) Two Seira Lubbock 1869 (Collembola, Arthropleona, Entomobryidae) new to science, with remarkable secondary sexual characters. Zootaxa, 1185, 21–35.

    https://doi.org/10.11646/zootaxa.1185.1.2

    Zhang, F. & Deharveng, L. (2015) Systematic revision of Entomobryidae (Collembola) by integrating molecular and new morphological evidence. Zoologica Scripta, 44 (3), 298‒311.

    https://doi.org/10.1111/zsc.12100

    Zhang, F., Bellini, B.C. & Soto-Adames, F.N. (2019) New insights into the systematics of Entomobryoidea (Collembola: Entomobryomorpha): first instar chaetotaxy, homology and classification. Zoological Systematics, 44(4), 249‒278.

    https://doi.org/10.11865/zs.201926

    Zhang, F., Deharveng, L. & Chen, J.-X. (2009) New species and rediagnosis of Coecobrya (Collembola: Entomobryidae), with a key to the species of the genus. Journal of Natural History, 43, 2597–2615.

    https://doi.org/10.1080/00222930903243970