Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2021-06-11
Page range: 125–130
Abstract views: 436
PDF downloaded: 13

DNA barcoding of deep-sea shrimp Sicyonia parajaponica Crosnier, 2003 (Crustacea: Decapoda: Sicyoniidae) from southwest coast of India

Crustacean Fisheries Division, Central Marine Fisheries Research Institute, Ernakulam North P.O., P.B. No. 1603, Cochin-682018, Kerala, India.
Crustacean Fisheries Division, Central Marine Fisheries Research Institute, Ernakulam North P.O., P.B. No. 1603, Cochin-682018, Kerala, India.
Crustacean Fisheries Division, Central Marine Fisheries Research Institute, Ernakulam North P.O., P.B. No. 1603, Cochin-682018, Kerala, India.
Crustacean Fisheries Division, Central Marine Fisheries Research Institute, Ernakulam North P.O., P.B. No. 1603, Cochin-682018, Kerala, India.
Crustacea Taxonomy deep-sea penaeid shrimp phylogenetic Southwestern India

Abstract

The present work reports detailed taxonomic information on deep-sea shrimp Sicyonia parajaponica from southwest Indian waters. The samples were caught in bottom trawls conducted between the depths of 200 and 230 m from Sakthikulangara fishing harbour off Kollam, Kerala along the Arabian Sea during November 2019. DNA barcoding and a phylogenetic analysis was used to explore the relationship of the genus Sicyonia based on mitochondrial cytochrome c oxidase subunit 1 (COI: MN816389, MN816390) with the present specimen and sequences retrieved from NCBI GenBank. There is no difference in the intraspecies genetic distance (0%) while interspecies genetic distance (19.0–28.1%) revealed divergence between the species (COI) of the genus Sicyonia.

 

References

  1. Bilgin, R., Utkan, M., Kalkan, E., Karhan, S. & Bekbolet, M. (2014) DNA barcoding of twelve shrimp species (Crustacea: Decapoda) from Turkish seas reveals cryptic diversity. Mediterranean Marine Science, 16 (1), 36–45.

    https://doi.org/10.12681/mms.548

    Camargo, T.R., Rossi, N., Castilho, A.L., Costa, R.C., Mantelatto, F.L. & Zara, F.J. (2016) Integrative analysis of sperm ultrastructure and molecular genetics supports the phylogenetic positioning of the sympatric rock shrimps Sicyonia dorsalis and Sicyonia typica (Decapoda, Sicyoniidae). Zoomorphology, 135 (1), 67–81.

    https://doi.org/10.1007/s00435-015-0287-2

    Crosnier, A. (2003) Sicyonia (Crustacea, Decapoda, Penaeoidea, Sicyoniidae) de I’Indo-ouest Pacifique. Zoosystema, 25 (2), 197–348.

    Chakraborty, R.D. (2017) Taxonomy, biology and distribution of deep sea shrimps. In: Training Manual on Species Identification. CMFRI, Kochi, pp. 142–159. [PMid:28182984]

    Chakraborty, R.D., Purushothaman, P., Kuberan, G., Maheswarudu, G., Sarada, P.T., Rajool Shanis, C.P., Sreesanth, L., Ragesh, N., Baby, P.K. & Radhakrishnan, M. (2019) Deep sea Shrimp Resources of India. Available from: http://eprints.cmfri.org.in/id/eprint/13403 (accessed 11 May 2021)

    https://doi.org/10.13140/RG.2.2.11935.20645

    Darling, J.A. (2011) Interspecific hybridization and mitochondrial introgression in invasive Carcinus shore crabs. PLoS ONE, 6 (3), e17828.

    https://doi.org/10.1371/journal.pone.0017828

    De Grave, S. & Fransen, C.H.J.M. (2011) Carideorum catalogus: the recent species of the dendrobranchiate, stenopodidean, procarididean and caridean shrimps (Crustacea: Decapoda). Zoologische Mededelingen Leiden, 85, 195–589.

    Felsenstein, J. (1993) Phylogeny inference package (PHYLIP). Version 3.5. University of Washington Seattle. [program]

    Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.

    George, M.J. (1966) On a collection of the penaeid prawns from the offshore waters off the south-west coast of India. Proceedings of the Symposium on Crustacea, Marine Biological Association of Indea, Part 1, 337–346.

    Kathirvel, M., Thirumilu, P. & Gokul, A. (2007) Indian penaeid shrimps—their biodiversity and economical values. In: National symposium on Conservation and Valuation of Marine Biodiversity. Zoological Survey of India, Kolkata, pp. 161–176.

    Komai, T. (2011) Deep-sea Shrimps and Lobsters (Crustacea: Decapoda: Dendrobranchiata and Pleocyemata) from the Sagami Sea and Izu Islands, Central Japan. Memoirs of the National Museum of Nature and Science, Tokyo, 47, 279–337.

    Kurian, C.V. (1953) A preliminary survey of the bottom fauna deposits of the Travancore coast within the 15 fathom line. Proceedings of the National Institute of Sciences of India, 19 (6), 746–775.

    Muthu, M.S. (1968) On some new records of penaeid prawns from the east coast of India. Indian Journal of Fisheries, 15 (1 & 2), 145–154.

    Radhakrishnan, E.V., Deshmukh, V.D., Maheswarudu, G., Josileen, J., Dineshbabu, A.P., Philipose, K.K., Sarada, P.T., Lakshmi Pillai, S., Saleela, K.N., Chakraborty, R., Dash, G., Sajeev, C.K., Thirumilu, P., Sridhara, B., Muniyappa, Y., Sawant, A.D., Vaidya, N.G., Johny, R.D., Verma, J.B., Baby, P.K., Unnikrishnan, C., Ramachandran, N.P., Vairamani, A., Palanichamy, A., Radhakrishnan, M. & Raju, B. (2012) Prawn fauna (Crustacea: Decapoda) of India—An annotated checklist of the penaeoid, sergestoid, stenopodid and caridean prawns. Journal of the Marine Biological Association of India, 54, 50–72.

    Sanger, F., Nicklen, S., Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences of the United States of America, 74, 5463–5467.

    https://doi.org/10.1073/pnas.74.12.5463

    Shanis, C.P.R., Akhilesh, K.V., Ganga, U. & Pillai, N.G.K. (2013) New distribution record of the rock shrimp, Sicyonia parajaponica Crosnier, 2003 from Indian waters. Indian Journal of Fisheries, 60 (1), 131–132.

    Thirumilu, P. (2011) First record of Sicyonia parajaponica Crosnier, 2003 along Chennai coast. Marine Fisheries Information Service, 209, 12–13.

    Vaitheeswaran, T. (2017) Sicyonia Parajaponica, A Rare Record of Rock Shrimp (Crustacea: Decapoda: Penaeoidea: Sicyoniidae), off Thoothukudi Coast of Gulf of Mannar. International Journal of Aquaculture, 7 (12), 83–85.

    Vergamini, F.G., Pileggi, L.G. & Mantelatto, F.L. (2011) Genetic variability of the Amazon River prawn Macrobrachium amazonicum (Decapoda, Caridea, Palaemonidae). Contributions to Zoology, 80, 67–83.

    https://doi.org/10.1163/18759866-08001003

    Yang, C.H., Tsuchida, S., Fujikura, K., Fujiwara, Y., Kawato, M. & Chan, T.Y. (2016) Connectivity of the squat lobsters Shinkaia crosnieri (Crustacea: Decapoda: Galatheidae) between cold seep and hydrothermal vent habitats. Bulletin of Marine Science, 92, 17–31.

    https://doi.org/10.5343/bms.2015.1031