Skip to main content Skip to main navigation menu Skip to site footer
Type: Monograph
Published: 2023-06-07
Page range: 1-74
Abstract views: 613
PDF downloaded: 33

Two centuries of sponges (phylum Porifera) taxonomic studies in Indonesia (1820–2021): checklist and bibliography

Universitas Hasanuddin; Fakultas Ilmu Kelautan dan Perikanan; Program Doktor Ilmu Perikanan; Makassar 90245; Indonesia; Balai Pengembangan Penjaminan Mutu Pendidikan Vokasi Bidang Kelautan Perikanan Teknologi Informasi dan Komunikasi (BPPMPV KPTK); Departemen Kelautan/Laboratorium Hasil Laut; Gowa 92172; Indonesia; Lestari Alam Laut Untuk Negeri (LATUN); Bengkulu 38116; Indonesia
Universitas Hasanuddin; Fakultas Ilmu Kelautan dan Perikanan; Program Studi Ilmu Kelautan; Makassar 90245; Indonesia
Universitas Hasanuddin; Fakultas Ilmu Kelautan dan Perikanan; Program Studi Ilmu Kelautan; Makassar 90245; Indonesia
Naturalis Biodiversity Center; Marine Biodiversity; 2333 CR Leiden; The Netherlands; Leiden University; Institute of Environmental Sciences (CML); Department of Environmental Biology; 2333 CC Leiden; The Netherlands
Porifera Calcarea Demospongiae Hexactinellida Homoscleromorpha Indo-Pacific Taxonomy and systematics

Abstract

Sponges in Indonesia have been studied since the 19th century during several historical expeditions and international collaborations. Hundreds of new species were reported from various locations, e.g., Ambon, Ternate, Sulawesi, Aru, and Kei Islands. This study aimed to create a sponge (Porifera: Calcarea, Demospongiae, Hexactinellida, and Homoscleromorpha) species checklist from Indonesia based on World Porifera Database. With a total of 731 species, our checklist comprises approximately 45 species of Calcarea, 566 species of Demospongiae, 115 species of Hexactinellida, and five species of Homoscleromorpha. The number of species are recorded from 12 marine ecoregions across the Indonesian Archipelago and freshwater habitats (Spongillida) between 1820–2021. The species composition indicates higher regional endemism or poorly studied since no other report after the original description. However, several marine ecoregions of Indonesia remain highly overlooked (e.g., Northeast Sulawesi, Papua, Southern Java, Western Sumatra), including freshwater habitats. Therefore, a taxonomic biodiversity baseline study, particularly on Porifera, is necessary to better understand the aquatic and marine biodiversity in the Indonesia Archipelago.

 

References

  1. Alvarez, B. & Hooper, J.N.A. (2009) Taxonomic revision of the order Halichondrida (Porifera: Demospongiae) of northern Australia. Family Axinellidae. Beagle, 25, 17–42. https://doi.org/10.5962/p.287472
  2. Alvarez, B., van Soest, R.W.M. & Rützler, K. (2002) Svenzea, a new genus of Dictyonellidae (Porifera: Demospongiae) from tropical reef environments, with description of two new species. Contributions to Zoology, 71, 171–176. https://doi.org/10.1163/18759866-07104007
  3. Alvarez, B., de Voogd, N.J. & van Soest, R.W.M. (2016) Sponges of the family Axinellidae (Porifera: Demospongiae) in Indonesia. Zootaxa, 4137 (4), 451–477. https://doi.org/10.11646/zootaxa.4137.4.1
  4. Ambo-Rappe, R. & Moore, A.M. (2019) Sulawesi Seas, Indonesia. In: Sheppard, C. (Ed.), World Seas: an Environmental Evaluation Volume II: The Indian Ocean to the Pacific. Academic Press, London, pp. 559–581.
  5. Amir, I. (1992) A Comparison of Sponge Fauna of Exposed and Sheltered Reef Flats in Eastern Indonesia. Marine Research in Indonesia, 28, 1–12. https://doi.org/10.14203/mri.v28i0.411
  6. Andradi-Brown, D.A., Beer, A.J.E., Colin, L., Hastuti, Head, C.E.I., Hidayat, N.I., Lindfield, S.J., Mitchell, C.R., Pada, D.N., Piesinger, N.M., Purwanto & Ahmadia, G.N. (2021) Highly diverse mesophotic reef fish communities in Raja Ampat, West Papua. Coral Reefs, 40, 111–130. https://doi.org/10.1007/s00338-020-02020-7
  7. Andréfouët, S., Paul, M. & Farhan, A.R. (2022) Indonesia’s 13558 islands: A new census from space and a first step towards a One Map for Small Islands Policy. Marine Policy, 135, 104848. https://doi.org/10.1016/j.marpol.2021.104848
  8. Annandale, N. (1918) Zoological Results of a Tour in the Far East. Memoirs of the Asiatic Society of Bengal, 6, 199–216.
  9. Annandale, N. (1924) Sponges from brackish water on Verlaten Island near Krakatau. Treubia, 5, 402–407. https://doi.org/10.14203/treubia.v5i4.1693
  10. Arndt, W. (1943) Das “Philippische Elefantenohr” Spongia thienemanni n.sp. Zugleich ein Überbklick über unsere bisherige Kenntnis des Vorkommens geographischer Rassen bei Meereschwämmen. Archiv für Hydrobiologie, 40, 381–443.
  11. Asaad, I., Lundquist, C.J., Erdmann, M.V. & Costello, M.J. (2018) Delineating priority areas for marine biodiversity conservation in the Coral Triangle. Biological Conservation, 222, 198–211. https://doi.org/10.1016/j.biocon.2018.03.037
  12. Ashok, A.M., Schönberg, C.H.L., Laju, R.L. & Edward, J.K.P. (2019) Coral-killing sponge Terpios hoshinota in Southeast India—bested by Acropora muricata? Marine Biodiversity 49, 1069–1070. https://doi.org/10.1007/s12526-019-00966-8
  13. Azzini, F., Calcinai, B. & Pansini, M. (2007) A new species of Coelocarteria (Porifera: Demospongiae) from Sulawesi, Indonesia. Journal of the Marine Biological Association of the United Kingdom, 87, 1349–1353. https://doi.org/10.1017/S0025315407058365
  14. Barber, P.H., Moosa, M.K. & Palumbi, S.R. (2002) Rapid recovery of genetic diversity of stomatopod populations on Krakatau: Temporal and spatial scales of marine larval dispersal. Proceedings of the Royal Society B: Biological Sciences, 269, 1591–1597. https://doi.org/10.1098/rspb.2002.2026
  15. Barber, P.H., Palumbi, S.R., Erdmann, M.V. & Moosa, M.K. (2000) A marine Wallace’s line? Nature, 406, 692–693. https://doi.org/10.1038/35021135
  16. Becking, L.E. (2012) Marine Lakes of Indonesia. Leiden University.
  17. Becking, L.E. (2013) Revision of the genus Placospongia (Porifera, Demospongiae, Hadromerida, Placospongiidae) in the Indo-West Pacific. ZooKeys, 298, 39–76. https://doi.org/10.3897/zookeys.298.1913
  18. Becking, L.E., Cleary, D.F.R. & de Voogd, N.J. (2013) Sponge species composition, abundance, and cover in marine lakes and coastal mangroves in Berau, Indonesia. Marine Ecology Progress Series, 481, 105–120. https://doi.org/10.3354/meps10155
  19. Becking, L.E. & Lim, S.C. (2009) A new Suberites (Demospongiae: Hadromerida: Suberitidae) from the tropical Indo-West Pacific. Zoologische Mededelingen, 83, 853–862.
  20. Bell, J.J., Barnes, D.K.A. & Turner, J.R. (2002) The importance of micro and macro morphological variation in the adaptation of a sublittoral demosponge to current extremes. Marine Biology, 140, 75–81. https://doi.org/10.1007/s002270100665
  21. Bell, J.J., Jompa, J., Haris, A., Werorilangi, S., Shaffer, M. & Mortimer, C. (2018) Domination of mesophotic ecosystems in the Wakatobi Marine National Park (Indonesia) by sponges, soft corals and other non-hard coral species. Journal of the Marine Biological Association of the United Kingdom, 99, 771–775. https://doi.org/10.1017/S0025315418000917
  22. Bell, J.J. & Smith, D. (2004) Ecology of sponge assemblages (Porifera) in the Wakatobi region, south-east Sulawesi, Indonesia: Richness and abundance. Journal of the Marine Biological Association of the United Kingdom, 84, 581–591. https://doi.org/10.1017/S0025315404009580h
  23. Bergquist, P.R. (1980) A revision of the supraspecific classification of the orders Dictyoceratida, Dendroceratida, and Verongida (class Demospongiae). New Zealand Journal of Zoology, 7, 443–503. https://doi.org/10.1080/03014223.1980.11760680
  24. Bergquist, P.R. & Kelly-Borges, M. (1995) Systematics and Biogeography of the Genus Ianthella (Demospongiae: Verongida: Ianthellidae) in the South-west Pacific. The Beagle : Records of the Museums and Art Galleries of the Northern Territory, 12, 151–176.
  25. Bergquist, P.R. & Kelly, M. (2004) Taxonomy of some Halisarcida and Homosclerophorida (Porifera: Demospongiae) from the Indo‐Pacific. New Zealand Journal of Marine and Freshwater Research, 38, 51–66. https://doi.org/10.1080/00288330.2004.9517217
  26. Best, M.B., Hoeksema, B.W., Moka, W., Moll, H., Suharsono & Sutarna, I.N. (1989) Recent Scleractinian coral species collected during the Snellius-II expedition in Eastern Indonesia. Netherlands Journal of Sea Research, 23, 107–115. https://doi.org/10.1016/0077-7579(89)90005-7
  27. Bickford, D., Lohman, D.J., Sodhi, N.S., Ng, P.K.L., Meier, R., Winker, K., Ingram, K.K. & Das, I. (2007) Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution, 22, 148–155. https://doi.org/10.1016/j.tree.2006.11.004
  28. Borchiellini, C., de Pao Mendonca, K., Vernale, A., Rocher, C., Ereskovsky, A., Vacelet, J. & Renard, E. (2021) Porifera (Sponges): Recent Knowledge and New Perspectives. Encyclopedia of Life Sciences, 2021, 1–10. https://doi.org/10.1002/9780470015902.a0029283
  29. Borojevic, R. & Boury-Esnault, N. (1986) Une nouvelle voie d’évolution chez les éponges Calcinea: description des genres Burtonulla n. g. et Levinella n. g. Bulletin du Muséum national d’Histoire naturelle, 4 (A), 443–455.
  30. Boury-Esnault, N. (2006) Systematics and evolution of Demospongiae. Canadian Journal of Zoology, 84, 205–224. https://doi.org/10.1139/z06-003
  31. Boury-Esnault, N., Lavrov, D.V., Ruiz, C.A. & Pérez, T. (2013) The integrative taxonomic approach applied to Porifera: A case study of the Homoscleromorpha. Integrative and Comparative Biology, 53, 416–427. https://doi.org/10.1093/icb/ict042
  32. Bowerbank, J.S. (1869) A Monograph of the Siliceo-fibrous Sponges. Part II. Proceedings of the Zoological Society of London, 2, 323–351, pls. XXI–XXV.
  33. Bowerbank, J.S. (1875) Contributions to a General History of the Spongiadae. Part VII. Proceedings of the Zoological Society of London, 1875, 281–296.
  34. Bowerbank, J.S. (1877) Descriptions of five new species of sponges discovered by A.B. Meyer on the Philippine Islands and New Guinea. Proceedings of the Zoological Society of London, 456–464.
  35. Breitfuss, L.L. (1896) Amphoriscus semoni, eine neue Art heterocoeler Kalkschwämme. Zoologischer Anzeiger, 19, 435–436.
  36. Breitfuss, L.L. (1898) Kalkschwämme von Ternate. Abhandlungen Senckenbergischen Naturforschenden Gesellschaft, 24, 167–178.
  37. Brøndsted, H.V. (1934) Sponges. In: Van Straelen, V. (Ed.), Résultats Scientifiques du Voyage aux Indes Orientales Néerlandaises de LL. AA. RR. le Prince et la Princesse Léopold de Belgique. Mémoires du Musée royal d’histoire naturelle de Belgique, Hors série, pp. 1–27.
  38. Burton, M. (1928) Report on some Deep-Sea Sponges from the Indian Museum collected by R.I.M.S. “Investigator’’. Part II. Tetraxonida (concluded) and Euceratosa.” Records of the Indian Museum, 30, 109–138.
  39. Burton, M. (1930a) Norwegian Sponges from the Norman Collection. Proceedings of the Zoological Society of London, 100, 487–546. https://doi.org/10.1111/j.1096-3642.1930.tb00989.x
  40. Burton, M. (1930b) The Porifera of the Siboga Expedition. III. Calcarea. Siboga-Expeditie. Uitkomsten op zoologisch, botanisch, oceanographisch en geologisch gebied verzameld in Nederlandsch Oost-lndië 1899-1900aan boord H.M. ‘Siboga’’ onder commando van Luitenant ter Zee 1e kl. G.F. Tydeman, Monographie VIa2, 9 , 1–18.
  41. Burton, M. & Rao, H.S. (1932) Report on the shallow water marine sponges in the collection of the Indian Museum. Part I. Records of the Indian Museum, 34, 299–356.
  42. Calcinai, B., Bastari, A., Bavestrello, G., Bertolino, M., Horcajadas, S.B., Pansini, M., Makapedua, D.M. & Cerrano, C. (2017a) Demosponge diversity from North Sulawesi, with the description of six new species. ZooKeys, 2017, 105–150. https://doi.org/10.3897/zookeys.680.12135
  43. Calcinai, B., Bastari, A., Makapedua, D.M. & Cerrano, C. (2017b) Mangrove sponges from Bangka Island (North Sulawesi, Indonesia) with the description of a new species. Journal of the Marine Biological Association of the United Kingdom, 97, 1417–1422. https://doi.org/10.1017/S0025315416000710
  44. Calcinai, B., Bavestrello, G., Bertolino, M., Pica, D., Wagner, D. & Cerrano, C. (2013) Sponges associated with octocorals in the Indo-Pacific, with the description of four new species. Zootaxa, 3617 (1), 1–61. https://doi.org/10.11646/zootaxa.3617.1.1
  45. Calcinai, B., Bavestrello, G. & Cerrano, C. (2004) Dispersal and association of two alien species in the Indonesian coral reefs: The octocoral Carijoa riisei and the demosponge Desmapsamma anchorata. Journal of the Marine Biological Association of the United Kingdom, 84, 937–941. https://doi.org/10.1017/S0025315404010227h
  46. Calcinai, B., Bavestrello, G. & Cerrano, C. (2005) Excavating sponge species from the Indo-Pacific Ocean. Zoological Studies, 44, 5–18.
  47. Calcinai, B., Cerrano, C. & Bavestrello, G. (2007) Three new species and one re-description of Aka. Journal of the Marine Biological Association of the United Kingdom, 87, 1355–1365. https://doi.org/10.1017/S0025315407058377
  48. Calcinai, B., Cerrano, C., Totti, C., Romagnoli, T. & Bavestrello, G. (2006) Symbiosis of Mycale (Mycale) vansoesti sp. nov. (Porifera, Demospongiae) with a coralline alga from North Sulawesi (Indonesia). Invertebrate Biology, 125, 195–204. https://doi.org/10.1111/j.1744-7410.2006.00052.x
  49. Carballo, J.L., Aguilar-Camacho, J.M., Knapp, I.S. & Bell, J.J. (2013) Wide distributional range of marine sponges along the Pacific Ocean. Marine Biology Research, 9, 768–775. https://doi.org/10.1080/17451000.2013.765581
  50. Cárdenas, P., Gamage, J., Hettiarachchi, C.M. & Gunasekera, S. (2022) Good Practices in Sponge Natural Product Studies : Revising Vouchers with Isomalabaricane Triterpenes. Marine Drugs, 20, 1–20. https://doi.org/10.3390/md20030190
  51. Cárdenas, P. & Moore, J.A. (2019) First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 49, 163–174. https://doi.org/10.1007/s12526-017-0775-3
  52. Cárdenas, P., Pérez, T. & Boury-Esnault, N. (2012) Sponge Systematics Facing New Challenges. In: Becerro, M.A., Uriz, M.J., Maldonado, M. & Turon, X. (Eds.), Advances in Marine Biology. Advances in Sponge Science: Phylogeny, Systematics, Ecology. Academic Press, London, pp. 79–209.
  53. Cárdenas, P., Xavier, J.R., Reveillaud, J., Schander, C. & Rapp, H.T. (2011) Molecular phylogeny of the astrophorida (Porifera, Demospongiae) reveals an unexpected high level of spicule homoplasy. PLoS ONE, 6, e18318. https://doi.org/10.1371/journal.pone.0018318
  54. Carter, H.J. (1883a) Contributions to our Knowledge of the Spongida. Pachytragida. Annals and Magazine of Natural History, Series 5, 11 (65), 344–369, pls. XIV–XV. https://doi.org/10.1080/00222938309459163
  55. Carter, H.J. (1883b) Contributions to our knowledge of the Spongida. Annals and Magazine of Natural History, Series 5, 12 (71), 308–329, pls. XI–XIV. https://doi.org/10.1080/00222938309459636
  56. Cathalot, C., Van Oevelen, D., Cox, T.J.S., Kutti, T., Lavaleye, M., Duineveld, G. & Meysman, F.J.R. (2015) Cold-water coral reefs and adjacent sponge grounds: Hotspots of benthic respiration and organic carbon cycling in the deep sea. Frontiers in Marine Science, 2, 1–12. https://doi.org/10.3389/fmars.2015.00037
  57. Cavalcanti, F.F., Rapp, H.T. & Klautau, M. (2013a) Taxonomic revision of leucascus dendy, 1892 (Porifera: Calcarea) with revalidation of ascoleucetta dendy & frederick, 1924 and description of three new species. Zootaxa, 3619 (3), 275–314. https://doi.org/10.11646/zootaxa.3619.3.3
  58. Cavalcanti, F.F., Skinner, L.F. & Klautau, M. (2013b) Population dynamics of cryptogenic calcarean sponges (Porifera, Calcarea) in Southeastern Brazil. Marine Ecology, 34, 280–288. https://doi.org/10.1111/maec.12013
  59. Cleary, D.F.R., Polónia, A.R.M., Becking, L.E., de Voogd, N.J., Purwanto, Gomes, H. & Gomes, N.C.M. (2018a) Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia. Marine Biodiversity, 48, 1889–1901. https://doi.org/10.1007/s12526-017-0697-0
  60. Cleary, D.F.R., Polónia, A.R.M. & de Voogd, N.J. (2018b) Prokaryote composition and predicted metagenomic content of two Cinachyrella Morphospecies and water from West Papuan Marine Lakes. FEMS Microbiology Ecology, 94 (2), fix175. [published online] https://doi.org/10.1093/femsec/fix175
  61. Cóndor-Luján, B., Leocorny, P., Padua, A., Azevedo, F., Seixas, V.C., Hooker, Y., Hajdu, E., Willenz, P., Pérez, T. & Klautau, M. (2021) Evolutionary history of the calcareous sponge Clathrina aurea: genetic connectivity in the Western Atlantic and intriguing occurrence in the Eastern Pacific. Marine Biology, 168, 1–23. https://doi.org/10.1007/s00227-021-03934-8
  62. Dendy, A. (1913) The Percy Sladen trust expedition to the Indian Ocean in 1905 (V). I. Report on the Calcareous Sponges collected by HMS “Sealark’’ in the Indian Ocean.” Transactions of the Linnean Society of London, 2, 1–29.
  63. Dendy, A. (1922) Report on the Sigmatotetraxonida collected by H.M.S.“Sealark’’ in the Indian Ocean. In: Reports of the Percy Sladen Trust Expedition to the Indian Ocean in 1905, Vol. 7.” Transactions of the Linnean Society of London, 18, 1–164, pls. 1–18.
  64. Desqueyroux-Faúndez, R. (1981) Révision de la collection d’éponges d’Amboine (Moluques, Indonésie) constitué par Bedot et Pictet et conservée au Muséum d’histoire naturelle de Genève. Revue suisse de Zoologie, 88, 723–764.
  65. Diaz, M.C. & Rützler, K. (2009) Biodiversity and Abundance of Sponges in Caribbean Mangrove: Indicators of Environmental Quality. In: Lang, M.A., Macintyre, I.G. & Rützler, K. (Eds.), Proceedings of the Smithsonian Marine Science Symposium. Smithsonian Institution Scholarly Press, Washington, D.C., pp. 151–172.
  66. Díaz, M.C. & van Soest, R.W.M. (1994) The Plakinidae: a systematic review. In: van Soest, R.W.M., van Kempen, T.M.G. & Braekman, J.-C. (Eds.), Sponges in Time and Space. Biology, Chemistry, Paleontology. Balkema, Rotterdam, pp. 93–109.
  67. Dohrmann, M., Janussen, D., Reitner, J., Collins, A.G. & Wörheide, G. (2008) Phylogeny and evolution of glass sponges (Porifera, Hexactinellida). Systematic Biology, 57, 388–405. https://doi.org/10.1080/10635150802161088
  68. Dohrmann, M., Kelley, C., Kelly, M., Pisera, A., Hooper, J.N.A. & Reiswig, H.M. (2017) An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida). Frontiers in Zoology, 14, 1–31. https://doi.org/10.1186/s12983-017-0191-3
  69. Domingos, C., Lage, A. & Muricy, G. (2016) Overview of the biodiversity and distribution of the Class Homoscleromorpha in the Tropical Western Atlantic. Journal of the Marine Biological Association of the United Kingdom, 96, 379–389. https://doi.org/10.1017/S0025315415000375
  70. Downey, R. V., Griffiths, H.J., Linse, K. & Janussen, D. (2012) Diversity and Distribution Patterns in High Southern Latitude Sponges. PLOS ONE 7, e41672. https://doi.org/10.1371/journal.pone.0041672
  71. Dragnewitsch, P. (1905) Spongien von Singapore. In: Inaugural-Dissertation der Hohen philosphischen Fakultät der Universität Bern. Neukomm & Zimmermann, Bern, pp. 1–36.
  72. Dustan, P., Doherty, O. & Pardede, S. (2013) Digital Reef Rugosity Estimates Coral Reef Habitat Complexity. PLOS ONE, 8, e57386. https://doi.org/10.1371/journal.pone.0057386
  73. Eder, C., Proksch, P., Wray, V., van Soest, R.W.M., Ferdinandus, E., Pattisina, L.A. & Sudarsono (1999a) New Bromopyrrole Alkaloids from the Indopacific Sponge Agelas nakamurai. Journal of Natural Products, 62, 1295–1297. https://doi.org/10.1021/np990071f
  74. Eder, C., Proksch, P., Wray, V., Steube, K., Bringmann, G., van Soest, R.W.M., Sudarsono, Ferdinandus, E., Pattisina, L.A., Wiryowidagdo, S. & Moka, W. (1999b) New Alkaloids from the Indopacific Sponge Stylissa carteri. Journal of Natural Products, 62, 184–187. https://doi.org/10.1021/np980315g
  75. Ehlers, E. (1870) Die Esper’schen Spongien in der zoologischen Sammlung der K. Universität Erlangen. E.Th. Jacob, Erlangen, 36 pp.
  76. van der Ent, E., Hoeksema, B.W. & de Voogd, N.J. (2016) Abundance and genetic variation of the coral-killing cyanobacteriosponge Terpios hoshinota in the Spermonde Archipelago, SW Sulawesi, Indonesia. Journal of the Marine Biological Association of the United Kingdom, 96, 453–463. https://doi.org/10.1017/S002531541500034X
  77. Erpenbeck, D., Aryasari, R., Benning, S., Debitus, C., Kaltenbacher, E., Al-Aidaroos, A.M., Schupp, P., Hall, K., Hooper, J.N.A., Voigt, O., de Voogd, N.J. & Wörheide, G. (2017) Diversity of two widespread Indo-Pacific demosponge species revisited. Marine Biodiversity, 47, 1035–1043. https://doi.org/10.1007/s12526-017-0783-3
  78. Erpenbeck, D., Ekins, M., Enghuber, N., Hooper, J.N.A., Lehnert, H., Poliseno, A., Schuster, A., Setiawan, E., de Voogd, N.J., Wörheide, G. & van Soest, R.W.M. (2016a) Nothing in (sponge) biology makes sense-except when based on holotypes. Journal of the Marine Biological Association of the United Kingdom, 96, 305–311. https://doi.org/10.1017/S0025315415000521
  79. Erpenbeck, D. & van Soest, R.W.M. (2007) Status and Perspective of Sponge Chemosystematics. Marine Biotechnology, 9, 2–19. https://doi.org/10.1007/s10126-005-6109-7
  80. Erpenbeck, D., Steiner, M., Schuster, A., Genner, M.J., Manconi, R., Pronzato, R., Ruthensteiner, B., van den Spiegel, D., van Soest, R.W.M. & Wörheide, G. (2019) Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. In: Steinke, D. (Ed.), Genome, 62, pp. 1–10. https://doi.org/10.1139/gen-2018-0098
  81. Erpenbeck, D., Voigt, O., Al-Aidaroos, A.M., Berumen, M.L., Büttner, G., Catania, D., Guirguis, A.N., Paulay, G., Schätzle, S. & Wörheide, G. (2016b) Molecular biodiversity of Red Sea demosponges. Marine Pollution Bulletin, 105, 507–514. https://doi.org/10.1016/j.marpolbul.2015.12.004
  82. Evans, R. (1901) A Description of Ephydatia Blembingia, with an Account of the Formation and Structure of the Gemmule. Quarterly Journal of Microscopical Science, 44, 71–109, pls. 1–4. https://doi.org/10.1242/jcs.s2-44.173.71
  83. Förderer, M. & Langer, M.R. (2018) Atlas of benthic foraminifera from coral reefs of the Raja Ampat Archipelago (Irian Jaya, Indonesia). Micropaleontology, 64, 1–170.
  84. Förderer, M., Rödder, D. & Langer, M.R. (2018) Patterns of species richness and the center of diversity in modern Indo-Pacific larger foraminifera. Scientific Reports, 8, 8189. https://doi.org/10.1038/s41598-018-26598-9
  85. Fromont, J., Richards, Z.T. & Wilson, N.G. (2019) First Report of the Coral-Killing Sponge Terpios hoshinota Rützler and Muzik, 1993 in Western Australia: A New Threat to Kimberley Coral Reefs? Diversity, 11, 184. https://doi.org/10.3390/d11100184
  86. Fujii, T., Keshavmurthy, S., Zhou, W., Hirose, E., Chen, C.A. & Reimer, J.D. (2011) Coral-killing cyanobacteriosponge (Terpios hoshinota) on the Great Barrier Reef. Coral Reefs, 30, 483–483. https://doi.org/10.1007/s00338-011-0734-6
  87. Galitz, A., Nakao, Y., Schupp, P.J., Wörheide, G. & Erpenbeck, D. (2021) A Soft Spot for Chemistry-Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution. Marine Drugs, 19, 448. https://doi.org/10.3390/md19080448
  88. Gazave, E., Lapébie, P., Ereskovsky, A. V., Vacelet, J., Renard, E., Cárdenas, P. & Borchiellini, C. (2012) No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera. Hydrobiologia, 687, 3–10. https://doi.org/10.1007/s10750-011-0842-x
  89. Gee, N.G. (1930) Notes on the fresh-water sponges from the Dutch East Indies. Treubia, 12, 67–144. https://doi.org/10.14203/treubia.v12i1.1871
  90. Gerovasileiou, V., Martínez García, A., Álvarez Noguera, F., Boxshall, G., Humphreys, W.F., Jaume, D., Becking, L.E., Muricy, G., van Hengstum, P.J., Yamasaki, H., Bailly, N. & Iliffe, T.M. (2021) World Register of Marine Cave Species (WoRCS). Available from: http://www.marinespecies.org/worcs (accessed 12 September 2021)
  91. Glover, A.G., Higgs, N. & Horton, T. (2021) World Register of Deep-Sea species (WoRDSS). Available from: http://www.marinespecies.org/deepsea (accessed 12 September 2021)
  92. Gray, J.E. (1858) On Aphrocallistes, a New Genus of Spongiadae from Malacca. Proceedings of the Zoological Society of London, 26, 114–115, pl. XI.
  93. Gray, J.E. (1867) On Placospongia, a new generic form of Spongiadae in the British Museum. Proceedings of the Zoological Society of London, 127–129.
  94. Gray, J.E. (1873) On two new free sponges from Singapore. Annals and Magazine of Natural History, 11, 234–235. https://doi.org/10.1080/00222937308696805
  95. Hadi, T.A., Hafizt, M., Hadiyanto, Budiyanto, A. & Siringoringo, R.M. (2018) Shallow water sponges along the south coast of Java, Indonesia. Biodiversitas, 19, 485–493. https://doi.org/10.13057/biodiv/d190223
  96. Haeckel, E. (1872) Die Kalkschwämme. Eine Monographie in zwei Bänden Text und einem Atlas mit 60 Tafeln Abbildungen. Vols. 1–3. G. Reimer, Berlin, 484 pp., 418 pp. & 60 pls.
  97. Hajdu, E. (1995) Macroevolutionary patterns within the demosponge order Poecilosclerida. Phylogeny of the marine cosmopolitan genus Mycale, and an integrated approach to biogeography of the seas. University of Amsterdam, Amsterdam. [unknown pagination]
  98. Handayani, D., Edrada, R.A., Proksch, P., Wray, V., Witte, L., Van Soest, R.W.M., Kunzmann, A. & Soedarsono (1997) Four New Bioactive Polybrominated Diphenyl Ethers of the Sponge Dysidea herbacea from West Sumatra, Indonesia. Journal of Natural Products, 60, 1313–1316. https://doi.org/10.1021/np970271w
  99. Hardwicke, T. (1820) Meeting of the Asiatic Society June 1820. Literal and philosophical intelligence. The Asiatic Journal, 9, 586.
  100. Hardwicke, T. (1822) Desription of a Zoophyte, commonly found about the Coasts of Singapore—with a Plate. Asiatic Researches, 14, 6.
  101. Harting, P. (1870) Mémoire sur le genre Poterion. Société des Arts et des Sciences d’Utrecht, Pays Bas, 1870, 1–40, 11 pls.
  102. Heery, E.C., Hoeksema, B.W., Browne, N.K., Reimer, J.D., Ang, P.O., Huang, D., Friess, D.A., Chou, L.M., Loke, L.H.L., Saksena-Taylor, P., Alsagoff, N., Yeemin, T., Sutthacheep, M., Vo, S.T., Bos, A.R., Gumanao, G.S., Syed Hussein, M.A., Waheed, Z., Lane, D.J.W., Johan, O., Kunzmann, A., Jompa, J., Suharsono, Taira, D., Bauman, A.G. & Todd, P.A. (2018) Urban coral reefs: Degradation and resilience of hard coral assemblages in coastal cities of East and Southeast Asia. Marine Pollution Bulletin, 135, 654–681. https://doi.org/10.1016/j.marpolbul.2018.07.041
  103. Helmy, T., Serehy, H. el, Mohamed, S.Z. & van Soest, R.W.M. (2004) Description and classification of dictyoceratid sponges from the Northern Red Sea. Beaufortia, 54, 81–91.
  104. Hentschel, E. (1912) Kiesel- und Hornschwämme der Aru- und Kei-Inseln. Abhandlungen herausgegeben von der Senckenbergischen naturforschenden Gesellschaft, 34, 293–448, pls 13-21.
  105. Herklots, J.A. & Marshall, W. (1868) Notice sur deux espèces nouvelles d’éponges de la famille des Lophospongiae. Archives néerlandaises des sciences exactes et naturelles, 3, 435–438.
  106. Hiemstra, F. & van Soest, R.W.M. (1991) Didiscus verdensis spec. nov.(Porifera: Halichondrida) from the Cape Verde Islands, with a revision and phylogenetic classification of the genus Didiscus. Zoölogische Mededelingen. Rijksmuseum van Natuurlijke Historie te Leiden, 65, 39–52.
  107. Ho, H., Oktaviyani, S., Peristiwady, T., Lee, M., Jaafar, Z., Lim, K. & Hui, T.H. (2021) Preliminary checklist of fishes obtained from South Java Deep-Sea (SJADES) Biodiversity Expedition 2018. Raffles Bulletin of Zoology, 36, 496–526. https://doi.org/10.26107/RBZ-2021-0051
  108. Hoeksema, B.W. (2007) Delineation of the Indo-Malayan Centre of Maximum Marine Biodiversity: The Coral Triangle. In: Renema, W. (Ed.), Biogeography, Time, and Place: Distributions, Barriers, and Islands. Springer, Dordrecth, pp. 117–178.
  109. Hoeksema, B.W. & Cleary, D.F.R. (2004) The Sudden Death of a Coral Reef. Science, 303, 1293b–1294. https://doi.org/10.1126/science.303.5662.1293b
  110. Hoeksema, B.W. & Lane, D.J.W. (2014) The mushroom coral fauna (Scleractinia: Fungiidae) of Brunei Darussalam (South China Sea) and its relation to the coral triangle. Raffles Bulletin of Zoology, 62, 566–580.
  111. Hoeksema, B.W. & van der Meij, S.E.T. (2008) Cryptic marine biota of the Raja Ampat Island group (Preliminary results of the Raja Ampat Expedition 2007). Progress Report Ekspedisi Widya Nusantara LIPI, 2007, 73.
  112. Hoeksema, B.W. & Moka, W. (1989) Species assemblages and phenotypes of mushroom corals (fungiidae) related to coral reef habitats in the Flores sea. Netherlands Journal of Sea Research, 23, 149–160. https://doi.org/10.1016/0077-7579(89)90009-4
  113. Hoeksema, B.W. & Putra, K.S. (2000) The reef coral fauna of Bali in the centre of marine diversity. In: Proceedings 9th International Coral Reef Symposium. International Coral Reef Society, Bali, pp. 23–27.
  114. Hoeksema, B.W., Tuti, Y. & Suharsono (2009) Cryptic Marine Biodiversity of Raja Ampat Islands. Marine Research in Indonesia, 34, 97–101. https://doi.org/10.14203/mri.v34i2.515
  115. Hoeksema, B.W., Waheed, Z. & de Voogd, N.J. (2014) Partial mortality in corals overgrown by the sponge Terpios hoshinota at Tioman Island, Peninsular Malaysia (South China Sea). Bulletin of Marine Science, 90, 989–990. https://doi.org/10.5343/bms.2014.1047
  116. Hofman, C.C. & van Soest, R.W.M. (1995) Lissodendoryx species of the Indo-Malayan Archipelago (Demospongiae: Poecilosclerida). Beaufortia, 45, 77–103.
  117. Hooper, J.N.A. (1991) Revision of the Family Raspailiidae (Porifera: Demospongiae), with Description of Australian Species. Invertebrate Systematics, 5, 1179–1418. https://doi.org/10.1071/IT9911179
  118. Hooper, J.N.A. (1996) Revision of Microcionidae (Porifera: Poecilosclerida: Demospongiae), with Description of Australian Species. Memoirs of the Queensland Museum, 40, 1–626.
  119. Hooper, J.N.A., Kennedy, J.A. & Quinn, R.J. (2002) Biodiversity “hotspots”, patterns of richness and endemism, and taxonomic affinities of tropical Australian sponges (Porifera). Biodiversity and Conservation, 11, 851–885. https://doi.org/10.1023/A:1015370312077
  120. Hooper, J.N.A., Kennedy, J.A. & van Soest, R.W.M. (2000) Annotated checklist of sponges (Porifera) of the South China Sea Region. The Raffles Bulletin of Zoology, Supplement No. 8, 125–201.
  121. Hooper, J.N.A. & van Soest, R.W.M. (2002a) Order Poecilosclerida Topsent, 1928. In: Hooper, J.N.A. & van Soest, R.W.M. (Eds.), Systema Porifera: A Guide to the Classification of Sponges. Kluwer Academic/Plenum Publisher, New York, New York, pp. 403–408.
  122. Hooper, J.N.A. & van Soest, R.W.M. (Eds.) (2002b) Systema Porifera. A Guide to the Classification of Sponges. Vols. 1-2. Springer US, Boston, Massachusetts, 1708 pp. https://doi.org/10.1007/978-1-4615-0747-5_1
  123. Hooper, J.N.A., Sutcliffe, P. & Schlacher-Hoenlinger, M.A. (2008) New species of Raspailiidae (Porifera: Demospongiae: Poecilosclerida) from southeast Queensland. In: Davie, P.J.F. & Philips, J.A. (Eds.), Proceedings of the Thirteenth International Marine Biological Workshop. The Marine Fauna and Flora of Moreton Bay, Queensland. Memoirs of the Queensland Museum - Nature 54(1), Brisbane, Australia, pp. 1–22.
  124. Hooper, J.N.A. & Wiedenmayer, F. (1994) Porifera. In: Wells, A. (Ed.), Zoological Catalogue of Australia. Vol. 12. CSIRO, Melbourne, pp. 1–620.
  125. Ijima, I. (1927) The Hexactinellida of the Siboga Expedition. In: Weber, M. (Ed), Uitkomsten op zoologisch, botanisch, oceanographisch et geologisch Gebied versameld in Nederlandsk Oost-Indie 1899–1900. E.J. Brill, Leiden, pp. 1–383.
  126. Ise, Y. (2017) Taxonomic Review of Japanese Sponges (Porifera). In: Motokawa, M. & Kajihara, H. (Eds.), Species Diversity of Animals in Japan, Diversity and Commonality in Animals. Springer Japan, Tokyo, pp. 343–382.
  127. Ismet, M.S., Bengen, D.G., Radjasa, O.K. & Kawaroe, M. (2016) Komposisi dan Aktivitas Antibakteri Spons Laut dari Ekosistem Lamun yang Berbeda di Perairan Kepulauan Seribu Jakarta. Jurnal Ilmu dan Teknologi Kelautan Tropis, 8, 729–746.
  128. Ismet, M.S., Bengen, D.G., Setianingsih, W.A., Yudhani, B.A. & Natih, N.M.N. (2020) Associative-mesofauna abundance and its correlation with sponges antibacterial activity in seagrass ecosystem. IOP Conference Series: Earth and Environmental Science, 404, 012007. https://doi.org/10.1088/1755-1315/404/1/012007
  129. Juhel, J.-B., Utama, R.S., Marques, V., Vimono, I.B., Sugeha, H.Y., Kadarusman, Pouyaud, L., Dejean, T., Mouillot, D. & Hocdé, R. (2020) Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 287, 20200248. https://doi.org/10.1098/rspb.2020.0248
  130. Kasmiati, K., Yoshioka, Y., Okamoto, T. & Ojika, M. (2018) New Crambescidin-Type Alkaloids from the Indonesian Marine Sponge Clathria bulbotoxa. Marine Drugs, 16, 84. https://doi.org/10.3390/md16030084
  131. Kazanidis, G., Vad, J., Henry, L.-A., Neat, F., Berx, B., Georgoulas, K. & Roberts, J.M. (2019) Distribution of Deep-Sea Sponge Aggregations in an Area of Multisectoral Activities and Changing Oceanic Conditions. Frontiers in Marine Science, 6, 1–15. https://doi.org/10.3389/fmars.2019.00163
  132. Kennedy, J.A. (2000) Resolving the “Jaspis stellifera” complex. Memoirs of the Queensland Museum, 45, 453–476.
  133. Kersken, D., Janussen, D. & Arbizu, P.M. (2019) Deep-sea glass sponges (Hexactinellida) from polymetallic nodule fields in the Clarion-Clipperton Fracture Zone (CCFZ), northeastern Pacific: Part II—Hexasterophora. Marine Biodiversity, 49, 947–987. https://doi.org/10.1007/s12526-018-0880-y
  134. Kieschnick, O. (1896) Silicispongiae von Ternate nach den Sammlungen von Herrn Prof. Dr. W. Kükenthal. Zoologischer Anzeiger, 19, 526–534.
  135. Kieschnick, O. (1898) Die Kieselschwämme von Amboina. Inaugural Dissertation, Universität Jena, Jena, ‎Thuringia‎. [unknown pagination]
  136. Kieschnick, O. (1900) Kieselschwämme von Amboina. In: Semon, R. (Ed)., Zoologische Forschungsreisen in Australien und dem Malayischen Archipel Ausgesführt in den Jahren 1891–1893. Denkschriften der Medicinisch-Naturwissenschaftlichen Gesellschaft. G. Fischer, Jena, pp. 547–582.
  137. Klautau, M., Cóndor-Luján, B., Azevedo, F., Leocorny, P., Brandão, F.D.A.R. & Cavalcanti, F.F. (2020) Heteropia glomerosa (Bowerbank, 1873) (Porifera, Calcarea, Calcaronea), a new alien species in the Atlantic. Systematics and Biodiversity, 18, 362–376. https://doi.org/10.1080/14772000.2020.1758826
  138. Klautau, M., Lopes, M.V., Tavares, G. & Perez, T. (2022) Integrative taxonomy of calcareous sponges (Porifera: Calcarea) from Reunion Island, Indian Ocean. Zoological Journal of the Linnean Society, 194, 671–725. https://doi.org/10.1093/zoolinnean/zlab014
  139. Klautau, M., Russo, C.A.M., Lazoski, C., Boury-Esnault, N., Thorpe, J.P. & Solé-Cava, A.M. (1999) Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula. Evolution, 53, 1414–1422. https://doi.org/10.1111/j.1558-5646.1999.tb05406.x
  140. Kunzmann, A. & Efendi, Y. (1994) Are the coral reefs along the coast of West Sumatra serously damaged? In: Proceedings IOC-WESTPAC Third International Scientific Symposium, Bali, Indonesia, 22–26 November 1994. IOC-WESTPAC, Bali, pp. 504–513.
  141. Kusmana, C. (2014) Distribution and Current Status of Mangrove Forests in Indonesia. In: Faridah-Hanum, I., Latiff, A., Hakeem, K.R. & Ozturk, M. (Eds.), Mangrove Ecosystems of Asia. Springer New York, New York, New York, pp. 37–60.
  142. Kusumoto, B., Costello, M.J., Kubota, Y., Shiono, T., Wei, C., Yasuhara, M. & Chao, A. (2020) Global distribution of coral diversity: Biodiversity knowledge gradients related to spatial resolution. Ecological Research, 35, 315–326. https://doi.org/10.1111/1440-1703.12096
  143. Lane, D.J.W. & Hoeksema, B.W. (2016) Mesophotic mushroom coral records at Brunei Darussalam support westward extension of the coral triangle to the South China sea waters of Northwest Borneo. Raffles Bulletin of Zoology, 64, 204–212. https://doi.org/10.5281/zenodo.5355079
  144. de Laubenfels, M.W. (1954) The Sponges of the West-Central Pacific. Oregon State College, Oregon State University, Corvallis, Oregon, 336 pp.
  145. von Lendenfeld, R. (1903) Porifera. Tetraxonia. In: Schulze, F.E. (Ed.), Das Tierreich. Vol. 19. Friedländer, Berlin, pp. 168.
  146. von Lendenfeld, R. (1907) Die Tetraxonia. Wissenschaftliche Ergebnisse der Deutschen Tiefsee-Expedition auf der Dampfer Valdivia 1898–1899, 11, i–iv + 59–374, pls. IX–XLVI.
  147. Lévi, C. (1961) Spongiaires des Iles Philippines, principalement récoltées au voisinage de Zamboanga. Philippine Journal of Science, 88, 509–533.
  148. Lévi, C. (1964) Spongiaires des zones bathyale, abyssale et hadale. Galathea Report. Scientific Results of The Danish Deep-Sea Expedition Round the World, 1950–52, 7, 63–112, pls. II–XI.
  149. Lévi, C. (1990) Claviscopulia furcillata n. sp. et autres Hexactinellida (Porifera) des mers indonésiennes. Bulletin du Muséum d’Histoire naturelle, 12, 277–290.
  150. Lévi, C. & Lévi, P. (1989) Spongiaires (MUSORSTOM 1 & 2). In: Forest, J. (Ed.), Résultats des Campagnes MUSORSTOM. Vol. 4. Mémoires du Muséum national d’Histoire naturelle, Série A, Zoologie, 143, pp. 25–103.
  151. Lim, S.C., Putchakarn, S., Thai, M.Q., Wang, D. & Huang, Y.M. (2016) Inventory of sponge fauna from the Singapore Strait to Taiwan Strait along the western coastline of the South China Sea. Raffles Bulletin of Zoology, Supplement No. 34, 104–129.
  152. Lim, S.C. & Setiawan, E. (2021) A new Semperella (Hexactinellida : Amphidiscosida : Pheronematidae) from Indonesia, Indian Ocean. Raffles Bulletin of Zoology, Supplement No. 36, 23–28. https://doi.org/10.26107/RBZ-2021-0027
  153. Lim, S.C. & Tan, K.S. (2008) A new species of Tethycometes Sara 1994 (Porifera: Hadromerida: Tethyidae) from Singapore. Zootaxa, 1841 (1), 65–68. https://doi.org/10.11646/zootaxa.1841.1.6
  154. Lim, S.C., Tun, K. & Goh, E. (2012a) Rediscovery of the Neptune’s Cup sponge in Singapore: Cliona or Poterion? Contributions to Marine Science. A commemorative volume celebrating 10 years of research on St John’s Island, 2012, 49–56.
  155. Lim, S.C., de Voogd, N.J. & Tan, K.S. (2008) A guide to sponges of Singapore. Science Centre Singapore, Singapore, 173 pp. [https://www.marinespecies.org/aphia.php?p=sourcedetails&id=172674]
  156. Lim, S.C., de Voogd, N.J. & Tan, K.S. (2012b) Biodiversity of shallow-water sponges (Porifera) in Singapore and description of a new species of Forcepia (Poecilosclerida: Coelosphaeridae). Contributions to Zoology, 81, 55–71. https://doi.org/10.1163/18759866-08101004
  157. Lindgren, N.G. (1897) Beitrag zur Kenntniss der Spongienfauna des Malayischen Archipels und der chinesischen Meere. Zoologische Anzeiger, 547, 480–487. https://doi.org/10.5962/bhl.title.103170
  158. Lindgren, N.G. (1898) Beitrag zur Kenntniss der Spongienfauna des Malayischen Archipels und der chinesischen Meere. Zoologische Jahrbücher, Abteilung für Systematik, Geographie und Biologie der Thiere, 11, 283–378, pls. 17–20.
  159. López-Legentil, S., Erwin, P.M., Henkel, T.P., Loh, T.-L. & Pawlik, J.R. (2010) Phenotypic plasticity in the Caribbean sponge Callyspongia vaginalis (Porifera: Haplosclerida). Scientia Marina, 74, 445–453. https://doi.org/10.3989/scimar.2010.74n3445
  160. Low, M.E.Y. (2012) The Date of Publication of Cliona Patera (Hardwicke), the “Sponge Plant From the Shores of Singapore” (Porifera: Hadromerida: Clionaidae). Nature in Singapore, 5, 223–227.
  161. Lucas, S.G. (1986) Proper syntax when using aff. and cf. in taxonomic statements. Journal of Vertebrate Paleontology, 6, 202. https://doi.org/10.1080/02724634.1986.10011613
  162. Łukowiak, M., Van Soest, R., Klautau, M., Pérez, T., Pisera, A. & Tabachnick, K. (2022) The terminology of sponge spicules. Journal of Morphology, 283, 1517–1545. https://doi.org/10.1002/jmor.21520
  163. Manconi, R. & Pronzato, R. (2002) Suborder Spongillina subord. nov.: Freshwater Sponges. In: Hooper, J.N.A. & van Soest, R.W.M. (Eds.), Systema Porifera. Kluwer Academic/Plenum Publisher, New York, New York, pp. 921–1019.
  164. Manconi, R. & Pronzato, R. (2008) Global diversity of sponges (Porifera: Spongillina) in freshwater. Hydrobiologia, 595, 27–33. https://doi.org/10.1007/s10750-007-9000-x
  165. Manconi, R. & Pronzato, R. (2016a) How to survive and persist in temporary freshwater? Adaptive traits of sponges (Porifera: Spongillida): A review. Hydrobiologia, 782, 11–22. https://doi.org/10.1007/s10750-016-2714-x
  166. Manconi, R. & Pronzato, R. (2016b) Phylum Porifera. In: Thorp, J.H. & Rogers, D.C. (Eds.), Thorp and Covich’s Freshwater Invertebrates. Academic Press, San Diego, pp. 39–83.
  167. Manconi, R., Ruengsawang, N., Vannachak, V., Hanjavanit, C., Sangpradub, N. & Pronzato, R. (2013) Biodiversity in South East Asia: An overview of freshwater sponges (Porifera: Demospongiae: Spongillina). Journal of Limnology, 72, 313–326. https://doi.org/10.4081/jlimnol.2013.s2.e15
  168. Manuel, M., Borchiellini, C., Alivon, E., Le Parco, Y., Vacelet, J. & Boury-Esnault, N. (2003) Phylogeny and Evolution of Calcareous Sponges: Monophyly of Calcinea and Calcaronea, High Level of Morphological Homoplasy, and the Primitive Nature of Axial Symmetry K. Kjer (Ed). Systematic Biology, 52, 311–333. https://doi.org/10.1080/10635150390196966
  169. Manuel, M., Borojevic, R., Boury-Esnault, N. & Vacelet, J. (2002) Class Calcarea Bowerbank, 1864. In: Hooper, J.N.A. & van Soest, R.W.M. (Eds.), Systema Porifera: A Guide to the Classification of Sponges. Kluwer Academic/Plenum Publisher, New York, New York, pp. 1103–1110.
  170. Mariani, S., Uriz, M.J., Turon, X. & Alcoverro, T. (2006) Dispersal strategies in sponge larvae: Integrating the life history of larvae and the hydrologic component. Oecologia, 149, 174–184. https://doi.org/10.1007/s00442-006-0429-9
  171. Marlow, J., Bell, J.J., Shaffer, M., Haris, A. & Schönberg, C.H.L. (2021) Bioeroding sponge species from the Wakatobi region of southeast Sulawesi, Indonesia. Zootaxa, 4996 (1), 1–48. https://doi.org/10.11646/zootaxa.4996.1.1
  172. Marshall, W. (1875) Untersuchungen über Hexactinelliden. Zeitschrift für wissenschaftliche Zoologie, 25, 142–243, pls. XI–XVII.
  173. von Martens, E. (1868) Ueber einige ostasiatische Süsswasserthiere. Archiv für Naturgeschichte, 34, 1–64, pl. 1.
  174. Marzuki, I., Daris, L., Yunus, S. & Riana, A.D. (2020) Selection and characterization of potential bacteria for polycyclic aromatic biodegradation of hydrocarbons in sea sponges from Spermonde Islands, Indonesia. AACL Bioflux, 13, 3493–3506.
  175. Mayr, E. (1982) Of what use are subspecies? The Auk, 99, 593–595. https://doi.org/10.2307/4085949
  176. Melawaty, L., Noor, A., Harlim, T. & de Voogd, N. (2014) Essential metal Zn in sponge Callyspongia aerizusa from Spermonde Archipelago. Advances in Biological Chemistry, 04, 86–90. https://doi.org/10.4236/abc.2014.41012
  177. Miller, M.J., Wouthuyzen, S., Sugeha, H.Y., Kuroki, M., Tawa, A., Watanabe, S., Syahailatua, A., Suharti, S., Tantu, F.Y., Otake, T., Tsukamoto, K. & Aoyama, J. (2016) High biodiversity of leptocephali in Tomini Bay Indonesia in the center of the Coral Triangle. Regional Studies in Marine Science, 8, 99–113. https://doi.org/10.1016/j.rsma.2016.09.006
  178. Molengraaff, G.A.F. (1921) Modern Deep-Sea Research in the East Indian Archipelago. The Geographical Journal, 57, 95. https://doi.org/10.2307/1781559
  179. Morrow, C. & Cárdenas, P. (2015) Proposal for a revised classification of the Demospongiae (Porifera). Frontiers in Zoology, 12, 1–27. https://doi.org/10.1186/s12983-015-0099-8
  180. Muricy, G. (2011) Diversity of Indo-Australian Plakortis (Demospongiae: Plakinidae), with description of four new species. Journal of the Marine Biological Association of the United Kingdom, 91, 303–319. https://doi.org/10.1017/S0025315410000743
  181. Ng, P.K.L. & Rahayu, D.L. (2021) The first Indonesia – Singapore deep-sea expedition : South Java Deep-Sea (SJADES) Biodiversity Expedition 2018. Raffles Bulletin of Zoology, Supplement No. 36, 1–16. https://doi.org/10.26107/RBZ-2021-0025
  182. Nurhayati, A.P.D., Pratiwi, R., Wahyuono, S., Istriyati, Purnomo, H. & Abdillah, S. (2015) In Vitro Test and Molecular Docking of Alkaloid Compound in Marine Sponge Cinachyrella anomala against T47D Cell Cycle. Journal of Marine Science: Research & Development, 5, 158. https://doi.org/10.4172/2155-9910.1000158
  183. O’Hara, T.D., Williams, A., Ahyong, S.T., Alderslade, P., Alvestad, T., Bray, D., Burghardt, I., Budaeva, N., Criscione, F., Crowther, A.L., Ekins, M., Eléaume, M., Farrelly, C.A., Finn, J.K., Georgieva, M.N., Graham, A., Gomon, M., Gowlett-Holmes, K., Gunton, L.M., Hallan, A., Hosie, A.M., Hutchings, P., Kise, H., Köhler, F., Konsgrud, J.A., Kupriyanova, E., Lu, C.C., Mackenzie, M., Mah, C., MacIntosh, H., Merrin, K.L., Miskelly, A., Mitchell, M.L., Moore, K., Murray, A., O’Loughlin, P.M., Paxton, H., Pogonoski, J.J., Staples, D., Watson, J.E., Wilson, R.S., Zhang, J. & Bax, N.J. (2020) The lower bathyal and abyssal seafloor fauna of eastern Australia. Marine Biodiversity Records, 13, 11. https://doi.org/10.1186/s41200-020-00194-1
  184. Olson, D.M. & Dinerstein, E. (2002) The Global 200: Priority Ecoregions for Global Conservation. Annals of the Missouri Botanical Garden, 89, 199–224. https://doi.org/10.2307/3298564
  185. Olson, D.M., Dinerstein, E., Wikramanayake, E.D., Burgess, N.D., Powell, G.V.N., Underwood, E.C., D’Amico, J.A., Itoua, I., Strand, H.E., Morrison, J.C., Loucks, C.J., Allnutt, T.F., Ricketts, T.H., Kura, Y., Lamoreux, J.F., Wettengel, W.W., Hedao, P. & Kassem, K.R. (2001) Terrestrial ecoregions of the world: A new map of life on Earth. BioScience, 51, 933–938. https://doi.org/10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
  186. Pansini, M. & Longo, C. (2003) A review of the Mediterranean Sea sponge biogeography with, in appendix, a list of the demosponges hitherto recorded from this sea. Biogeographia—The Journal of Integrative Biogeography, 24, 59–90. https://doi.org/10.21426/B6110107
  187. Pisera, A., Rützler, K., Kaz’mierczak, J. & Kempe, S. (2010) Sponges in an extreme environment: suberitids from the quasi-marine Satonda Island crater lake (Sumbawa, Indonesia). Journal of the Marine Biological Association of the United Kingdom, 90, 203–212. https://doi.org/10.1017/S0025315409990968
  188. Poléjaeff, N. (1883) Report on the Calcarea dredged by H.M.S. “Challenger”, during the years 1873–1876. Report on the Scientific Results of the Voyage of H.M.S. ‘Challenger’, 1873–1876. Zoology, 8, 1–76.
  189. Poléjaeff, N. (1884) Report on the Keratosa collected by H.M.S.“Challenger’’ during the years 1873–1876.” Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873–76, Zoology, 11, 1–88, pls. 1–10.
  190. Poléjaeff, N. (1889a) Spongiological studies. Chapter V. On Korotnewia desiderata n. g., n. sp. and the histogenesis of the skeleton in keratose sponges. Proceedings of St Petersbourg, Naturalist Society, 7, 190–215, pl I.
  191. Poléjaeff, N. (1889b) Über Korotnewia desiderata und die Phylogenie der Hornschwämme. Zoologischer Anzeiger, 12, 366–367.
  192. Putra, S.A. (2014) Kolonisasi Komunitas Karang di Cagar Alam Laut Krakatau, dan Implikasi Pengelolaannya. Institut Pertanian Bogor, Bogor Regency. [unknown pagination]
  193. Putra, S.A. (2020) Rapid Survey Reveal Healthy Coral-Sponge Communities on Krakatau Reefs. Berita Biologi, 19, 99–115. https://doi.org/10.14203/beritabiologi.v19i1.3779
  194. Quoy, J.R.C. & Gaimard, J.P. (1833) Voyage de la corvette l’Astrolabe : exécuté par ordre du roi, pendant les années 1826–1827–1828–1829, sous le commandement de M. J. Dumont d’Urville. Zoologie. Tastu, Paris, 954 pp. [http://www.biodiversitylibrary.org/bibliography/2132]
  195. Reid, R.E.H. (1968) Bathymetric distributions of Calcarea and Hexactinellida in the present and the past. Geological Magazine, 105, 546–559. https://doi.org/10.1017/S0016756800055904
  196. Reid, R.E.H. (1969) Notes on Hexactinellid sponges: 5. Verrucocoeloida gen. nov., with a discussion of the genera Verrucocoelia Etallon and Periphragella. Marshall. Journal of Natural History, London, 3, 485–492.
  197. Reiswig, H.M. (2002) Class Hexactinellida Schmidt, 1870. In: Hooper, J.N.A. & van Soest, R.W.M. (Eds.), Systema Porifera: A Guide to the Classification of Sponges. Kluwer Academic/Plenum Publisher, New York, New York, pp. 1201–1210.
  198. Reitner, J., Wörheide, G., Hooper, J.N.A. & Kempe, S. (1999) An unusual suberitid demosponge from a marine alkaline crater lake (Satonda Island, Indonesia). Memoirs of the Queensland Museum, 44, 477–478.
  199. Richards, Z.T. (2015) The status of hard coral communities at Kosrae, Micronesia. Marine Biodiversity, 45, 655–666. https://doi.org/10.1007/s12526-014-0266-8
  200. Ridley, S.O. (1884a) Notes on Sponges, with Description of a new Species. Annals and Magazine of Natural History, Series 5, 14 (81), 183–187. https://doi.org/10.1080/00222938409459791
  201. Ridley, S.O. (1884b) Spongiida. Report on the Zoological Collections made in the Indo-Pacific Ocean during the Voyage of H.M.S. ‘Alert’, 1881-2. (British Museum (Natural History): London)., 366–482, pls 39–43; 582–630, 53–54.
  202. Ridley, S.O. (1885) Monaxonida. In: Tizard, T.H., Moseley, H.N., Buchanan, J.Y. & Murray, J. (Eds.), Narrative of the cruise of H.M.S. Challenger, with a general account of the scientific results of the Expedition. Reports of the Scientific Results of the Voyage of the Challenger, 1885, pp. 569–573.
  203. Ridley, S.O. & Dendy, A. (1886) Preliminary report on the Monaxonida collected by H.M.S. “Challenger”. Part I. Annals and Magazine of Natural History, Series 5, 18 (108), 325–351 + 470–493. https://doi.org/10.1080/00222938609459998
  204. Ridley, S.O. & Dendy, A. (1887) Report on the Monaxonida collected by H.M.S. “Challenger” during the years 1873–76. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873–76, Zoology, 20 (Part 5), 1–275, pls. 1–51, 1 map.
  205. von Rintelen, K., von Rintelen, T., Meixner, M., Lüter, C., Cai, Y. & Glaubrecht, M. (2007) Freshwater shrimp-sponge association from an ancient lake. Biology Letters 3, 262–264. https://doi.org/10.1098/rsbl.2006.0613
  206. Rosell, D. & Uriz, M.J. (1997) Phylogenetic Relationships within the Excavating Hadromerida (Porifera), with a Systematic Revision. Cladistics, 13, 349–366. https://doi.org/10.1111/j.1096-0031.1997.tb00324.x
  207. Rossi, G., Montori, S., Cerrano, C. & Calcinai, B. (2015) The coral killing sponge Chalinula nematifera (Porifera: Haplosclerida) along the eastern coast of Sulawesi Island (Indonesia). Italian Journal of Zoology, 82, 143–148. https://doi.org/10.1080/11250003.2014.994046
  208. Rovellini, A., Dunn, M.R., Fulton, E.A., Webster, N.S., Smith, D.J., Jompa, J., Haris, A., Berman, J. & Bell, J.J. (2019) Decadal variability in sponge abundance and biodiversity on an Indo-Pacific coral reef. Marine Ecology Progress Series, 620, 63–76. https://doi.org/10.3354/meps12968
  209. Rudi, E., Campbell, S.J., Hoey, A.S., Fadli, N., Linkie, M. & Baird, A.H. (2012) The Coral Triangle Initiative: what are we missing? A case study from Aceh. Oryx, 46, 482–485. https://doi.org/10.1017/S0030605312000178
  210. Ruengsawang, N., Sangpradub, N., Artchawakom, T., Pronzato, R. & Manconi, R. (2017) Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand. European Journal of Taxonomy, 2017, 1–24. https://doi.org/10.5852/ejt.2017.260
  211. Ruiz, C., Ivanišević, J., Chevaldonné, P., Ereskovsky, A.V., Boury-Esnault, N., Vacelet, J., Thomas, O.P. & Pérez, T. (2015) Integrative taxonomic description of Plakina kanaky, a new polychromatic sponge species from New Caledonia (Porifera: Homoscleromorpha). Marine Ecology, 36, 1129–1143. https://doi.org/10.1111/maec.12209
  212. Rützler, K. (1971) Bredin-Archbold Smithsonian Biological Survey of Dominica: Burrowing sponges, Genus Siphonodictyon Bergquist, from the Caribbean. Smithsonian Contributions to Zoology, 632, 1–37. https://doi.org/10.5479/si.00810282.77
  213. Rützler, K., Diaz, M.C., van Soest, R.W.M., Zea, S., Smith, K.P., Alvarez, B. & Wulff, J.L. (2000) Diversity of sponge fauna in mangrove ponds, Pelican Cays, Belize. Atoll Research Bulletin, 476, 231–248.
  214. Rützler, K. & Muzik, K. (1993) Terpios hoshinota, a new cyanobacteriosponge threatening Pacific reefs. Scientia Marina, 57, 395–403.
  215. Rützler, K., Piantoni, C., Van Soest, R.W.M. & Díaz, M.C. (2014) Diversity of sponges (Porifera) from cryptic habitats on the Belize barrier reef near Carrie Bow Cay. Zootaxa, 3805 (1), 1–129. https://doi.org/10.11646/zootaxa.3805.1.1
  216. Samaai, T., Gibbons, M.J. & Kelly, M. (2006) Revision of the genus Latrunculia du Bocage, 1869 (Porifera: Demospongiae: Latrunculiidae) with descriptions of new species from New Caledonia and the Northeastern Pacific. Zootaxa, 1127 (1), 1–71. https://doi.org/10.11646/zootaxa.1127.1.1
  217. Santodomingo, N. & Becking, L.E. (2018) Unravelling the moons: review of the genera Paratetilla and Cinachyrella in the Indo-Pacific (Demospongiae, Tetractinellida, Tetillidae). ZooKeys, 791, 1–46. https://doi.org/10.3897/zookeys.791.27546
  218. Sarà, M. (1994) A rearrangement of the family Tethyidae (Porifera Hadromerida) with establishment of new genera and description of two new species. Zoological Journal of the Linnean Society, 110, 355–371. https://doi.org/10.1006/zjls.1994.1016
  219. Schlegel, H. (1858) Handleiding tot de beoefening der dierkunde. Breda, Koninklijke Militaire Akademie, 2, 1–628, pls. 1–27.
  220. Schönberg, C.H.L. (2000) Bioeroding sponges common to the Central Australian Great Barrier Reef: Descriptions of three new species, two new records, and additions to two previously described species. Senckenbergiana Maritima, 30, 161–221. https://doi.org/10.1007/BF03042965
  221. Schönberg, C.H.L. (2015) Monitoring bioeroding sponges: Using rubble, quadrat, or intercept surveys? Biological Bulletin, 228, 137–155. https://doi.org/10.1086/BBLv228n2p137
  222. Schönberg, C.H.L. (2021) No taxonomy needed: Sponge functional morphologies inform about environmental conditions. Ecological Indicators, 129, 107806. https://doi.org/10.1016/j.ecolind.2021.107806
  223. Schulz, E. (1900) Die Hornschwämme von Thursday Island and Amboina. In: Semon, R. (Ed.), Zoologische Forschungsreise in Australien und dem Malayischen Archipel. 5. Band. Systematik, Tiergeographie, Anatomie wirbelloser Tier. Denkschriften der Medicinisch-Naturwissenschaftlichen Gesellschaft zu Jena, Jena, pp. 525–543, pl. LVIII.
  224. Schulze, F.E. (1887) Report on the Hexactinellida collected by H.M.S. “Challenger’’ during the years 1873–76.” Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873–76, Zoology, 21, 1–514, pls. 1–104.
  225. Schulze, F.E. (1903) Caulophacus arcticus (Armauer Hansen) und Calycosoma gracile F.E. Sch. nov. spec. Abhandlungen der Koeniglichen Akademie der Wissenschaften zu Berlin, 1–22, pls. I–II.
  226. Schulze, F.E. (1904) Hexactinellida. Wissenschaftliche Ergebnisse der Deutschen Tiefsee-Expedition auf dem Dampfer “Valdivia” 1898–1899, 4, 1–266, separated atlas: pls. I–LII, 1 map.
  227. Setiawan, E., Chodiantoro, M.R., Insany, G.F., Subagio, I.B., Dewi, N.K. & Muzaki, F.K. (2021a) Short communication: Diversity of sponges associated in seagrass meadows at coastal area of Pacitan district, East Java, Indonesia. Biodiversitas, 22, 3105–3112. https://doi.org/10.13057/biodiv/d220803
  228. Setiawan, E., Erpenbeck, D., Wörheide, G. & de Voogd, N.J. (2018) Bearing the wrong identity: A case study of an Indo-Pacific common shallow water sponge of the genus Neopetrosia (Haplosclerida; petrosiidae). Zootaxa, 4500 (1), 43–58. https://doi.org/10.11646/zootaxa.4500.1.2
  229. Setiawan, E., Muzaki, F.K., Nurhayati, A.P.D. & Maulidina, N. (2019) Record of shallow-water sponges in Simeulue Island, Aceh Province, Indonesia. Biodiversitas, 20, 3246–3257. https://doi.org/10.13057/biodiv/d201117
  230. Setiawan, E., Relex, D. & Marshall, D.J. (2021b) Shallow-water Sponges from a High-sedimentation Estuarine Bay (Brunei, Northwest Borneo, Southeast Asia). Journal of Tropical Biodiversity and Biotechnology 6, 1–17. https://doi.org/10.22146/jtbb.66435
  231. Sibero, M.T., Igarashi, Y., Radjasa, O.K., Sabdono, A., Trianto, A., Zilda, D.S. & Wijaya, Y.J. (2019) Sponge-associated fungi from a mangrove habitat in Indonesia: species composition, antimicrobial activity, enzyme screening and bioactive profiling. International Aquatic Research, 11, 173–186. https://doi.org/10.1007/s40071-019-0227-8
  232. Sidabalok, C.M., Wong, H.P.S. & Ng, P.K.L. (2020) Description of the supergiant isopod Bathynomus raksasa sp. nov. (Crustacea, Isopoda, Cirolanidae) from southern Java, the first record of the genus from Indonesia. ZooKeys, 947, 39–52. https://doi.org/10.3897/zookeys.947.53906
  233. Sim-Smith, C. & Kelly, M. (2011) Two new genera in the family Podospongiidae (Demospongiae: Poecilosclerida) with eight new Western Pacific species. Zootaxa, 2976 (1), 32–54. https://doi.org/10.11646/zootaxa.2976.1.3
  234. Sluiter, C.P. (1890) Einiges über die Entstehung der Korallen in der Javasee un Branntweinsbai und über neue Korallenbildung bei Krakatau. Natuurkundig Tijdschrift Nederlandsch Indië, 49, 360–380.
  235. van Soest, R.W.M. (1989) The Indonesian sponge fauna: A status report. Netherlands Journal of Sea Research, 23, 223–230. https://doi.org/10.1016/0077-7579(89)90016-1
  236. van Soest, R.W.M. (1990) Shallow water reef sponges of Eastern Indonesia. In: Rützler, K. (Ed.), New Perspectives in Sponge Biology. Smithsonian Institution Press, Washington, D.C., pp. 302–308.
  237. van Soest, R.W.M. (1994) Demosponge distribution patterns. In: van Soest, R.W.M., van Kempen, T.M.G. & Braekman, J.C. (Eds.), Proceedings of the 4th International Porifera Congress. A.A. Balkema, Amsterdam, pp. 213–223.
  238. van Soest, R.W.M. (1998) A new sponge Desmapsamma vervoorti spec. nov. (Poecilosclerida: Desmacididae) from Indonesia. Zoologische Verhandelingen, 323, 427–434.
  239. van Soest, R.W.M. (2017) Flagellia, a new subgenus of Haliclona (Porifera, Haplosclerida). European Journal of Taxonomy, 2017, 1–48. https://doi.org/10.5852/ejt.2017.351
  240. van Soest, R.W.M. (2018) Mycale (Oxymycale) klausjanusorum sp. nov. (Porifera: Demospongiae: Poecilosclerida) from Flores Sea Deep Water, Indonesia. Zootaxa, 4466 (1), 49–60. https://doi.org/10.11646/zootaxa.4466.1.6
  241. van Soest, R.W.M., Aryasari, R. & de Voogd, N.J. (2021) Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida). Zootaxa, 4912 (1), 1–212. https://doi.org/10.11646/zootaxa.4912.1.1
  242. van Soest, R.W.M., Beglinger, E. & De Voogd, N. (2010) Skeletons in confusion: a review of astrophorid sponges with (dicho-)calthrops as structural megascleres (Porifera, Demospongiae, Astrophorida). ZooKeys, 68, 1–88. https://doi.org/10.3897/zookeys.68.729
  243. van Soest, R.W.M., Boury-Esnault, N., Vacelet, J., Dohrmann, M., Erpenbeck, D., de Voogd, N.J., Santodomingo, N., Vanhoorne, B., Kelly, M. & Hooper, J.N.A. (2012a) Global Diversity of Sponges (Porifera). PLOS ONE 7, e35105. https://doi.org/10.1371/journal.pone.0035105
  244. van Soest, R.W.M. & Braekman, J.C. (1999) Chemosystematics of porifera: a review. Memoirs of the Queensland Museum, 44, 569–589.
  245. van Soest, R.W.M., Carballo, J.L. & Hooper, J.N.A. (2012b) Polyaxone monaxonids: Revision of raspailiid sponges with polyactine megascleres (Cyamon and Trikentrion). ZooKeys, 239, 1–70. https://doi.org/10.3897/zookeys.239.3734
  246. van Soest, R.W.M. & Hooper, J.N.A. (1993) Taxonomy, phylogeny and biogeography of the marine sponge genus Rhabderemia Topsent, 1890 (Demospongiae, Poecilosclerida). Scientia Marina, 57, 319–351.
  247. van Soest, R.W.M., Hooper, J.N.A. & Butler, P.J. (2020) Every sponge its own name: Removing Porifera homonyms. Zootaxa, 4745 (1), 1–93. https://doi.org/10.11646/zootaxa.4745.1.1
  248. van Soest, R.W.M., Hooper, J.N.A. & Hiemstra, F. (1991) Taxonomy, phylogeny and biogeography of the marine sponge genus Acarnus (Porifera: Poecilosclerida). Beaufortia, 42, 49–88.
  249. van Soest, R.W.M. & de Voogd, N.J. (2015) Calcareous sponges of Indonesia. Zootaxa, 3951 (1), 1–105. https://doi.org/10.11646/zootaxa.3951.1.1
  250. Sokolova, A.M., Palatov, D.M., Masuda, Y. & Itskovich, V.B. (2021) Investigation of the spongillid Spongilla alba Carter, 1849 reveals a new group of brackish-water sponges. Systematics and Biodiversity, 19, 976–992. https://doi.org/10.1080/14772000.2021.1958948
  251. Sollas, I.B.J. (1902) On the Sponges collected during the “Skeat Expedition’’ to the Malay Peninsula 1899-1900.” Proceedings of the Zoological Society of London, 2, 210–221.
  252. Sollas, W.J. (1886) Preliminary account of the Tetractinellid sponges Dredged by H.M.S. “Challenger’’ 1872-76. Part I. The Choristida.” Scientific Proceedings of the Royal Dublin Society, New Series, 5, 177–199.
  253. Sollas, W.J. (1888) Report on the Tetractinellida collected by H.M.S. Challenger, during the years 1873-1876. Report on the Scientific Results of the Voyage of H.M.S. Challenger During the Years 187 –76, 25, 284–346.
  254. Spalding, M.D., Fox, H.E., Allen, G.R., Davidson, N., Ferdaña, Z.A., Finlayson, M., Halpern, B.S., Jorge, M.A., Lombana, A., Lourie, S.A., Martin, K.D., McManus, E., Molnar, J., Recchia, C.A. & Robertson, J. (2007) Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas. BioScience, 57, 573–583. https://doi.org/10.1641/b570707
  255. Starger, C.J., Barber, P.H., Ambariyanto & Baker, A.C. (2010) The recovery of coral genetic diversity in the Sunda Strait following the 1883 eruption of Krakatau. Coral Reefs, 29, 547–565. https://doi.org/10.1007/s00338-010-0609-2
  256. Suparno, N., Currier, K., Milner, C., Alling, A. & Dustan, P. (2019) Ecological changes in the coral reef communities of Indonesia’s Bali Barat National Park, 2011–2016. Atoll Research Bulletin, 2019, 1–35. https://doi.org/10.5479/si.0077-5630.620
  257. Supriyono, A., Schwarz, B., Wray, V., Witte, L., Müller, W.E.G., Soest, R. van, Sumaryono, W. & Proksch, P. (1995) Bioactive Alkaloids from the Tropical Marine Sponge Axinella carteri. Zeitschrift für Naturforschung C, 50, 669–674. https://doi.org/10.1515/znc-1995-9-1012
  258. Swierts, T., Peijnenburg, K.T.C.A., de Leeuw, C.A., Breeuwer, J.A.J., Cleary, D.F.R. & de Voogd, N.J. (2017) Globally intertwined evolutionary history of giant barrel sponges. Coral Reefs, 36, 933–945. https://doi.org/10.1007/s00338-017-1585-6
  259. Tabachnick, K.R. (1994) Distribution of recent Hexactinellida. In: van Soest, R.W.M., van Kempen, T.M.G. & Braekman, J.-C. (Eds.), Sponges in time and space: biology, chemistry, paleontology: Proceedings of the 4th International Porifera Congress : Amsterdam, Netherlands, 19–23 April 19933. A. A. Balkema, Rotterdam/Brookfield, pp. 225–232.
  260. Tabachnick, K.R. & Janussen, D. (2004) Description of a new species ans subspecies of Fieldingia, erection of a new family Fieldingidae and a new order Fieldingida (porifera; Hexactinellida; Hexastophora). Bolletino di Museo e Istituto di Biologia dell’Universita di Genova, 68, 623–637.
  261. Tabachnick, K.R., Janussen, D. & Menschenina, L.L. (2008) New Australian Hexactinellida (Porifera) with a revision of Euplectella aspergillum. Zootaxa, 1866 (1), 7–68. https://doi.org/10.11646/zootaxa.1866.1.3
  262. Tabachnick, K.R. & Levi, C. (1999) Revision of Lophophysema (Porifera: Hexactinellida: Hyalonematidae). Invertebrate Systematics, 13, 495–509. https://doi.org/10.1071/IT97025
  263. Tabachnick, K.R. & Lévi, C. (2000) Porifera Hexactinellida: Amphidiscophora off New Caledonia. In: Crosnier, A. (Ed.), Résultats des Campagnes MUSORSTOM 21. Mémoires du Muséum national d’Histoire naturelle. Série A, Zoologie. Publications Scientifiques du Muséum, Paris, pp. 53–140.
  264. Tanaka, Y. (2016) Coral diversity and coral reef environment in Brunei Darussalam. Scientia Bruneiana, 15, 13–17. https://doi.org/10.46537/scibru.v15i0.28
  265. Thiele, J. (1899) Studien über pazifische Spongien. II. Ueber einige Spongien von Celebes. Original-Abhandlungen aus dem Gesamtgebiete der Zoologie. Stuttgart, 24, 1–33.
  266. Thiele, J. (1900) Kieselschwämme von Ternate. I. Abhandlungen herausgegeben von der Senckenbergischen naturforschenden Gesellschaft. Frankfurt, 25, 19-80.
  267. Thiele, J. (1903) Kieselschwämme von Ternate. II. Abhandlungen herausgegeben von der Senckenbergischen naturforschenden Gesellschaft, 25, 933–968, pl. XVIII.
  268. Thornton, I.W.B. & Rosengren, N.J. (1988) Zoological expeditions to the Krakatau Islands, 1984 and 1985: General introduction. Philosophical Transactions of the Royal Society of London. B, Biological Sciences, 322, 273–316. https://doi.org/10.1098/rstb.1988.0126
  269. Tomascik, T. & Mah, A.J. (1994) The Ecology of “Halimeda Lagoon”: an Anchialine Lagoon of a Rised Atoll, Kakaban Island, East Kalimantan, Indonesia. Tropical Biodiversity, 2, 385–399.
  270. Tomascik, T., Mah, A.J., Nontji, A. & Moosa, M.K. (1997) The Ecology of the Indonesian Seas Part I. Oxford University Press, Oxford, 642 pp.
  271. Topsent, E. (1897) Spongiaires de la Baie d’Amboine. (Voyage de MM. M. Bedot et C. Pictet dans l’archipel Malais). Revue suisse de zoologie, 4, 421–487.
  272. Topsent, E. (1933) Eponges de Lamarck conservées au Muséum de Paris. Fin. Archives du Muséum national d’histoire naturelle, Paris, 10, 1–60.
  273. Turicchia, E., Hoeksema, B.W. & Ponti, M. (2018) The coral-killing sponge Chalinula nematifera as a common substrate generalist in Komodo National Park, Indonesia. Marine Biology Research, 14, 827–833. https://doi.org/10.1080/17451000.2018.1544420
  274. Umbgrove, J.H.F. (1926) The first days of the new submarine volcano near Krakatoa. Leidse Geologische Mededelingen, 2, 325–328.
  275. Umbgrove, J.H.F. (1931) De Koraalriffen van Emmahaven (W. Sumatra). Leidse Geologische Mededelingen, 4, 9–24.
  276. Umbgrove, J.H.F. (1939) De atollen en barrière-riffen der Togian-eilanden. Leidse Geologische Mededelingen, 11, 132–187.
  277. Umbgrove, J.H.F. (1940) Madreporaria from the Togian Reefs (Gulf of Tomini, North-Celebes). Zoologische Mededelingen, 22, 265–310.
  278. Urda, C., Fernández, R., Rodríguez, J., Pérez, M., Jiménez, C. & Cuevas, C. (2017) Daedophamide, a Cytotoxic Cyclodepsipeptide from a Daedalopelta sp. Sponge Collected in Indonesia. Journal of Natural Products, 80, 3054–3059. https://doi.org/10.1021/acs.jnatprod.7b00678
  279. Uriz, M.J. & Maldonado, M. (1996) The genus Igernella (Demospongiae: Dendroceratida with description of a new species from the central Atlantic. Bulletin de l’Institut royal des Sciences naturelles de Belgique, Biologie, 66, 153–163.
  280. Vacelet, J. & Boury-Esnault, N. (1995) Carnivorous sponges. Nature, 373, 333–335. https://doi.org/10.1038/373333a0
  281. Veron, J.E.N., DeVantier, L.M., Turak, E., Green, A.L., Kininmonth, S., Stafford-Smith, M. & Peterson, N. (2011) The Coral Triangle. In: Dubinsky, Z. & Stambler, N. (Eds.), Coral Reefs: An Ecosystem in Transition. Springer Netherlands, Dordrecht, pp. 47–55.
  282. Vicente, J., Webb, M.K., Paulay, G., Rakchai, W., Timmers, M.A., Jury, C.P., Bahr, K. & Toonen, R.J. (2022) Unveiling hidden sponge biodiversity within the Hawaiian reef cryptofauna. Coral Reefs, 41, 727–742. https://doi.org/10.1007/s00338-021-02109-7
  283. de Voogd, N.J. (2003) Amphimedon denhartogi spec. nov. (Porifera: Haplosclerida) from deep reef habitats in Indonesia. Zoologische Verhandelingen, 345, 413–418.
  284. de Voogd, N.J. (2004) Callyspongia (Euplacella) biru spec. nov. (Porifera: Demospongiae: Haplosclerida) from Indonesia. Zoologische Mededelingen, 78, 477–483.
  285. de Voogd, N.J. (2005) Indonesian Sponge: Biodiversity and Mariculture Potential. University of Amsterdam, Amsterdam, 174 pp.
  286. de Voogd, N.J. (2012) On sand-bearing myxillid sponges, with a description of Psammochela tutiae sp. nov. (Poecilosclerida, Myxillina) from the northern Moluccas, Indonesia. Zootaxa, 3155 (1), 21–28. https://doi.org/10.11646/zootaxa.3155.1.2
  287. de Voogd, N.J., Alvarez, B., Boury-Esnault, N., Carballo, J.L., Cárdenas, P., Díaz, M.-C., Dohrmann, M., Downey, R., Goodwin, C., Hajdu, E., Hooper, J.N.A., Kelly, M., Klautau, M., Lim, S.-C., Manconi, R., Morrow, C., Pinheiro, U., Pisera, A.B., Ríos, P., Rützler, K., Schönberg, C., Vacelet, J., van Soest, R.W.M. & Xavier, J. (2022) World Porifera Database. Available from: https://www.marinespecies.org/porifera (accessed 20 October 2022)
  288. de Voogd, N.J., Becking, L.E. & Cleary, D.F.R. (2009) Sponge community composition in the Derawan Islands, NE Kalimantan, Indonesia. Marine Ecology Progress Series, 396, 169–180. https://doi.org/10.3354/meps08349
  289. de Voogd, N.J., Becking, L.E., Hoeksema, B.W. & Soest, R.W.M. Van (2004) Sponge interactions with spatial competitors in the Spermonde Archipelago. Bolletino di Museo e Istituto di Biologia dell’Universita di Genova, 68, 253–261.
  290. de Voogd, N.J., Cleary, D., Hoeksema, B., Noor, A. & van Soest, R. (2006a) Sponge beta diversity in the Spermonde Archipelago, SW Sulawesi, Indonesia. Marine Ecology Progress Series, 309, 131–142. https://doi.org/10.3354/meps309131
  291. de Voogd, N.J. & Cleary, D.F.R. (2008) An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand Islands/Jakarta Bay reef complex, West-Java, Indonesia. Marine Ecology, 29, 205–215. https://doi.org/10.1111/j.1439-0485.2008.00238.x
  292. de Voogd, N.J. & Cleary, D.F.R. (2009) Variation in sponge composition among Singapore reefs. Raffles Bulletin of Zoology, 22, 59–67.
  293. de Voogd, N.J., Cleary, D.F.R.R. & Dekker, F. (2013) The coral-killing sponge Terpios hoshinota invades Indonesia. Coral Reefs, 32, 755. https://doi.org/10.1007/s00338-013-1030-4
  294. de Voogd, N.J., Parra-Velandia, F.J. & van Soest, R.W.M. (2008) A new Agelas (Demospongiae: Agelasida: Agelasidae) from the Thousands Islands, West-Java, Indonesia. Zoologische Mededelingen, Leiden, 82, 235–243.
  295. de Voogd, N.J. & van Soest, R.W.M. (2002) Indonesian sponges of the genus Petrosia Vosmaer (Demospongiae : Haplosclerida). Zoologische Mededelingen, Leiden, 76, 193–209.
  296. de Voogd, N.J. & van Soest, R.W.M. (2007) Acanthotetilla celebensis sp. nov., a new species from North Sulawesi, Indonesia (Porifera: Demospongiae: Spirophorida: Tetillidae). Zootaxa, 1397 (1), 25–28. https://doi.org/10.11646/zootaxa.1397.1.3
  297. de Voogd, N.J., van Soest, R.W.M. & Hoeksema, B.W. (1999) Cross shelf distribution patterns of reef sponges of SW Sulawesi. Memoirs of the Queensland Museum, 44, 147–154.
  298. de Voogd, N.J., de Weerdt, W.H. & van Soest, R.W.M. (2006b) The sponge fauna of the Anchialine Lakes of Kakaban and Maratua (East Kalimantan, Indonesia). In: Custódio, M.R., Lôbo-Hajdu, G., Hajdu, E. & Muricy, G. (Eds.), Book of Abstracts 7th International Sponge Symposium. Biodiversity, Innovation, Sustainability. 7–13 May 2006. Museu Nacional, Armação de Búzios, Rio de Janeiro, pp. 242.
  299. Vorstman, A.G. (1927) Zoetwatersponsen van West-Java. De Tropische Natuur, XV, 181–184.
  300. Vorstman, A.G. (1928) Sponsen uit eenige plassen en meren in Oost-Java. De Tropische Natuur, 17, 113–117.
  301. Vosmaer, G.C.J. (1880) The sponges of the Leyden Museum. I. The Family of the Desmacidinae. Notes from the Leyden Museum, 2, 99–164.
  302. Vosmaer, G.C.J. (1911) The Porifera of the Siboga-Expedition: 2. The genus Spirastrella. In: Weber, M. (Ed.), Siboga-Expeditie: uitkomsten op zoölogisch, botanisch, oceanographisch en geologisch gebied verzameld in Nederlandsch Oost-Indië 1899-1900 aan boord H.M. Siboga onder commando van Luitenant ter Zee 1e kl. G.F. Tydeman. E.J. Brill, Leyden, The Netherlands, pp. 69, plates I–XIV.
  303. Vosmaer, G.C.J. & Vernhout, J.H. (1902) The Porifera of the Siboga-Expedition. I. The genus Placospongia. In: Weber, M. (Ed.), Siboga-Expeditie. Uitkomsten op zoologisch, botanisch, oceanographisch en geologisch gebied verzameld in Nederlandsch Oost-lndië 1899-1900aan boord H.M. ‘Siboga’’ onder commando van Luitenant ter Zee 1e kl. G.F. Tydeman. 9 (Monographie VIa).’ E. J. Brill, Leiden, pp. 1–17.
  304. Waheed, Z. & Hoeksema, B.W. (2013) A tale of two winds: species richness patterns of reef corals around the Semporna peninsula, Malaysia. Marine Biodiversity, 43, 37–51. https://doi.org/10.1007/s12526-012-0130-7
  305. Waheed, Z., van Mil, H.G.J., Syed Hussein, M.A., Jumin, R., Golam Ahad, B. & Hoeksema, B.W. (2015) Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages. PLOS ONE, 10, e0146006. https://doi.org/10.1371/journal.pone.0146006
  306. Wallace, C.C. (1999) The Togian Islands: coral reefs with a unique coral fauna and an hypothesised Tethys Sea signature. Coral Reefs, 18, 162–162. https://doi.org/10.1007/s003380050173
  307. Wallace, C.C., Paulay, G., Hoeksema, B.W., Bellwood, D.R., Hutchings, P.A., Barber, P.H., Erdmann, M. & Wolstenholme, J. (2000) Nature and origins of unique high diversity reef faunas in the Bay of Tomini, Central Sulawesi: The ultimate “centre of diversity.” In: Proceedings of the 9th International Coral Reef Symposium, 23–27 October 2000. International Coral Reef Society, Bali, pp. 185–192.
  308. Weber, M. (1890) Spongillidae des Indischen Archipels. Zoologische Ergebnisse einer Reise nach Niederlandisch Ost-Indien, 30–47, pl. IV.
  309. de Weerdt, W.H. & van Soest, R.W.M. (2001) Haliclona (Halichoclona) vanderlandi spec. nov. (Porifera: Demospongiae: Haplosclerida) from Indonesia. Zoologische Verhandelingen, 334, 189–194.
  310. Weltner, W. (1901) Süsswasserspongien von Celebes. (Spongillidenstudien IV). Archiv für Naturgeschichte, 187–204, pls. VI–VII.
  311. Wijsman-Best, M. (1977) Coral Research in the Indonesian Archipelago, the Past, the Present, and the Future. Marine Research in Indonesia, 17, 1–14. https://doi.org/10.14203/mri.v17i0.347
  312. de Wilde, P.A.W.J., Kastoro, W.W., Berghuis, E.M., Aswandy, I., Al Hakim, I. & Kok, A. (1989) Structure and energy demand of the benthic soft-bottom communities in the Java Sea and around the islands of Madura and Bali, Indonesia. Netherlands Journal of Sea Research, 23, 449–461. https://doi.org/10.1016/0077-7579(89)90028-8
  313. Williams, D.E., Patrick, B.O., Tahir, A., Van Soest, R., Roberge, M. & Andersen, R.J. (2004) Boneratamides A−C, New Sesquiterpenoids Isolated from the Marine Sponge Axinyssa a plysinoides. Journal of Natural Products, 67, 1752–1754. https://doi.org/10.1021/np049798g
  314. Wilson, H. V. (1925) Silicious and horny sponges collected by the U.S. Fisheries Steamer “Albatross’’ during the Philippine Expedition,1907–10.” Bulletin of the United States National Museum. Contributions to the biology of the Philippine Archipelago and adjacent regions, 100, 273–532.
  315. Wörheide, G. (1998) The reef cave dwelling ultraconservative coralline demosponge Astrosclera willeyana Lister 1900 from the Indo-Pacific. Facies, 38, 1–88. https://doi.org/10.1007/BF02537358
  316. Wörheide, G., Dohrmann, M., Erpenbeck, D., Larroux, C., Maldonado, M., Voigt, O., Borchiellini, C. & Lavrov, D.V. (2012) Deep Phylogeny and Evolution of Sponges (Phylum Porifera). In: Becerro, M.A., Uriz, M.J., Maldonado, M. & Turon, X. (Eds.), Advances in Marine Biology. Advances in Sponge Science: Phylogeny, Systematics, Ecology. Academic Press, London, pp. 1–78.
  317. Wulff, J.L. (2006) Resistance vs recovery: Morphological strategies of coral reef sponges. Functional Ecology, 20, 699–708. https://doi.org/10.1111/j.1365-2435.2006.01143.x
  318. Wurz, E., Beazley, L., MacDonald, B., Kenchington, E., Rapp, H.T. & Osinga, R. (2021) The Hexactinellid Deep-Water Sponge Vazella pourtalesii (Schmidt, 1870) (Rossellidae) Copes With Temporarily Elevated Concentrations of Suspended Natural Sediment. Frontiers in Marine Science, 8, 1–15. https://doi.org/10.3389/fmars.2021.611539
  319. Xavier, J.R. & van Soest, R.W.M. (2012) Diversity patterns and zoogeography of the Northeast Atlantic and Mediterranean shallow-water sponge fauna. Hydrobiologia, 687, 107–125. https://doi.org/10.1007/s10750-011-0880-4
  320. Yang, S.-Y., Chen, H.-J., Ho, M.-J., Chen, Y.-J., Huang, Y.-Y., Chow, W.S., Tang, S.-L., Jeng, M.-S. & Chen, C.A. (2018) Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China Sea. Bulletin of Marine Science, 94, 1543–1544. https://doi.org/10.5343/bms.2018.0023
  321. Zainuddin, I., Pauzi, M.A., Abdul Razak, L. & Yazid, M.Y. (2000) Preliminary study on the diversity and distribution of sponges at Pulau Layang-layang, Sabah, Malaysia. The Malayan Nature Journal, 54, 77–86.