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Issue: Vol. 5474 No. 3: 27 Jun. 2024
Type: Article
Published: 2024-06-27
DOI: 10.11646/zootaxa.5474.3.2
Page range: 225-242
Abstract views: 5
PDF downloaded: 1

Morphology and molecular evidence reveal hidden diversity among snapping shrimp of the Alpheus obesomanus group (Decapoda: Alpheidae) with the description of a new species from Brazil

Programa de Pós-Graduação em Biologia Animal; Departamento de Zoologia; Universidade Federal de Pernambuco; Recife; Pernambuco; Brazil; Universidade Federal de Pernambuco (UFPE); Centro de Biociências; Departamento de Zoologia; Laboratório de Biologia de Crustáceos; Av. Moraes Rego; 1235; Cidade Universitária; 50670-901; Recife; Pernambuco; Brazil
Laboratório de Carcinologia; Departamento de Zoologia; Instituto de Biociências; Universidade Federal do Rio Grande do Sul (UFRGS). Av. Bento Gonçalves; 9500; Agronomia; 91501-970; Porto Alegre; Rio Grande do Sul; Brazil
Laboratório de Bioecologia e Sistemática de Crustáceos (LBSC); Departamento de Biologia; Faculdade de Filosofia Ciências e Letras de Ribeirão Preto (FFCLRP); Universidade de São Paulo (USP); Av. Bandeirantes; 3900; 14040-901; Ribeirão Preto; São Paulo; Brazil
Programa de Pós-Graduação em Biologia Animal; Departamento de Zoologia; Universidade Federal de Pernambuco; Recife; Pernambuco; Brazil
Programa de Pós-Graduação em Biologia Animal; Departamento de Zoologia; Universidade Federal de Pernambuco; Recife; Pernambuco; Brazil; Universidade Federal de Pernambuco (UFPE); Centro de Biociências; Departamento de Zoologia; Laboratório de Biologia de Crustáceos; Av. Moraes Rego; 1235; Cidade Universitária; 50670-901; Recife; Pernambuco; Brazil
Crustacea Alpheid coral reefs new taxon integrative taxonomy western Atlantic

Abstract

The snapping shrimp family Alpheidae Rafinesque, 1815 includes numerous species, most of which present controversial geographical distributions. The disjunct distribution of Alpheus simus Guérin-Méneville, 1856 in the western Atlantic, from Florida to the south of the Caribbean Sea and then from Rio Grande do Norte to Bahia in Brazil, suggests that Brazilian material may belong to an undescribed species. The examination of specimens previously identified as A. simus revealed the distinct morphology of material from Brazil, resulting in the description of a new species based on morphological and molecular evidence. The specimens were collected from fragments of fire coral at the Parque Municipal Marinho do Recife de Fora, Porto Seguro, Bahia, Brazil. Alpheus coralvivo sp. nov. belongs to the A. obesomanus group and is morphologically similar to A. simus (northwestern Atlantic) and A. saxidomus Holthuis, 1980 (eastern Pacific), differing mainly in the stylocerite and scaphocerite lengths and in the large gap between the cephalothorax and pleuron of the first pleonal segment. Molecular analysis using the mitochondrial cytochrome oxidase subunit I gene support the existence of the new species.

 

References

  1. Ali, J.R. & Hedges, S.B. (2021) Colonizing the Caribbean: New geological data and an updated land-vertebrate colonization record challenge the GAARlandia land-bridge hypothesis. Journal of Biogeography, 48, 2699–2707. https://doi.org/10.1111/jbi.14234
  2. Almeida, A.O., Boehs, G., Araújo-Silva, C.L. & Bezerra, L.E.A. (2012) Shallow-water caridean shrimps from southern Bahia, Brazil, including the first record of Synalpheus ul (Ríos & Duffy, 2007) (Alpheidae) in the southwestern Atlantic Ocean. Zootaxa, 3347 (1), 1–35. https://doi.org/10.11646/zootaxa.3347.1.1
  3. Almeida, A.O., Mossolin, E.C. & Christoffersen, M.L. (2016) Avaliação dos Camarões Alfeídeos (Decapoda: Caridea). In: Pinheiro, M.A.A. & Boos, H. (Eds.), Livro Vermelho dos Crustáceos do Brasil: Avaliação 2010–2014. Cap. 3. Sociedade Brasileira de Carcinologia – SBC, Porto Alegre, pp. 64–81.
  4. Almeida, A.O., Terossi, M., Buranelli, R.C., Castilho, A.L., Costa, R.C., Zara, F.J. & Mantelatto, F.L. (2018) Checklist of decapods (Crustacea) from the coast of São Paulo State (Brazil) supported by integrative molecular and morphological data: II. Infraorder Caridea: family Alpheidae. Zootaxa, 4450 (3), 331–358. https://doi.org/10.11646/zootaxa.4450.3.2
  5. Amaral, A.C.Z. & Jablonski, S. (2005) Conservation of marine and coastal biodiversity in Brazil. Conservation Biology, 19, 625–631. https://doi.org/10.1111/j.1523-1739.2005.00692.x
  6. Anker, A. (2001) Taxonomie et évolution des Alpheidae (Crustacea, Decapoda). Vols. 1 & 2. PhD thesis. Muséum National d’Histoire Naturelle, Paris, 547 pp. & 331 pp.
  7. Anker, A., Ahyong, S.T., Noël, P.Y. & Palmer, A.R. (2006) Morphological phylogeny of alpheid shrimps: parallel preadaptation and the origin of a key morphological innovation, the snapping claw. Evolution, 60, 2507–2528. https://doi.org/10.1111/j.0014-3820.2006.tb01886.x
  8. Anker, A. & Baeza, J.A. (2021) Thor dicaprio sp. nov., a new, conspicuously coloured shrimp from the tropical western Atlantic, with taxonomic remarks on the T. amboinensis (De Man, 1888) complex (Decapoda: Caridea: Thoridae) Zootaxa, 5039 (4), 495–517. https://doi.org/10.11646/zootaxa.5039.4.3
  9. Anker, A., Hurt, C. & Knowlton, N. (2008) Revision of the Alpheus cristulifrons species complex (Crustacea: Decapoda: Alpheidae), with description of a new species from the tropical Eastern Atlantic. Journal of the Marine Biological Association of the United Kingdom, 88, 543–562. https://doi.org/10.1017/S0025315408001136
  10. Anker, A. & Pachelle, P.P.G. (2013) Re-examination of the eastern Pacific and Atlantic material of Alpheus malleator Dana, 1852, with the description of Alpheus wonkimi sp. nov. (Crustacea: Decapoda: Alpheidae). Zootaxa, 3637 (4), 412–431. https://doi.org/10.11646/zootaxa.3637.4.2
  11. Anker, A. & Pachelle, P.P.G. (2014) Taxonomic notes on some Brazilian species of Synalpheus Spence Bate, 1888, with new records and description of a new species (Decapoda, Alpheidae). Zootaxa, 3815 (2), 215–232. https://doi.org/10.11646/zootaxa.3815.2.3
  12. Anker, A., Pachelle, P.P.G., De Grave, S. & Hultgren, K.M. (2012) Taxonomic and biological notes on some Atlantic species of the snapping shrimp genus Synalpheus Spence Bate, 1888 (Decapoda, Alpheidae). Zootaxa, 3598 (1), 1–96. https://doi.org/10.11646/zootaxa.3598.1.1
  13. Armstrong, J.C. (1949) New Caridea from the Dominican Republic. American Museum Novitates, 1410, 1–27.
  14. Banner, A.H. (1956) Contributions to the knowledge of the alpheid shrimp of the Pacific Ocean. Part I. Collections from the Mariana Archipelago. Pacific Science, 10, 318–373.
  15. Banner, A.H. (1959) Contributions to the knowledge of the alpheid shrimp of the Pacific Ocean. Part IV. Various small collections from the Central Pacific area, including supplementary notes on alpheids from Hawaii. Pacific Science, 13, 130–155.
  16. Banner, A.H. & Banner, D.M. (1966) Contributions to the knowledge of the alpheid shrimp of the Pacific Ocean. Part X. Collections from Fiji, Tonga and Samoa. Pacific Science, 20, 145–188.
  17. Bezerra, L.E.A. & Almeida, A.O. (2008) Crustacea, Decapoda, Caridea, Alpheidae, Alpheus simus Guérin-Méneville, 1856: Further report from Brazilian waters. Check List, 4, 57–61. https://doi.org/10.15560/4.1.57
  18. Buranelli, R.C. & Mantelatto, F.L. (2019) Comparative genetic differentiation study of three coexisting mangrove crabs in western Atlantic. Journal of Natural History, 53, 2883–2903. https://doi.org/10.1080/00222933.2020.1751889
  19. Burnham, Q. & Dawkins, K.L. (2013) The role of molecular taxonomy in uncovering variation within crayfish and the implications for Conservation. Freshwater Crayfish, 19, 29–37.
  20. Carvalho-Batista, A., Terossi, M., Zara, F.J., Mantelatto, F.L. & Costa, R.C. (2019) A multigene and morphological analysis expands the diversity of the seabob shrimp Xiphopenaeus Smith, 1869 (Decapoda: Penaeidae), with descriptions of two new species. Scientifc Reports, 9, 15281. https://doi.org/10.1038/s41598-019-51484-3
  21. Chace, F.A. Jr. (1972) The shrimps of the Smithsonian Bredin Caribbean Expeditions with a summary of the West Indian shallow-water species (Crustacea: Decapoda: Natantia). Smithsonian Contributions to Zoology, 98, 1–179. https://doi.org/10.5479/si.00810282.98
  22. Chace, F.A. Jr. (1988) The caridean shrimps (Crustacea: Decapoda) of the Albatross Philippine Expedition, 1907–1910, Part 5: Family Alpheidae. Smithsonian Contributions to Zoology, 466, 1–99. https://doi.org/10.5479/si.19436696.391.1
  23. Christoffersen, M.L. (1979) Campagne de la Calypso au large des côtes Atlantiques de l’Amerique du Sud (1961–1962). I. Decapod Crustacea: Alpheoida. Annales de l’Institut Océanographique, 55, 297–377.
  24. Coelho, P.A. & Ramos, M.A. (1972) A constituição e a distribuição da fauna de decápodos do litoral leste da América do Sul entre as latitudes de 5°N e 39°S. Trabalhos Oceanográficos da Universidade Federal de Pernambuco, 13, 133–236. https://doi.org/10.5914/tropocean.v13i1.2555
  25. Collette, B.C. & Rützler, K. (1977) Reef fishes over sponge bottoms off the mouth of the Amazon River. Proceedings of the Third International Coral Reef Symposium. University of Miami, Miami, Florida, pp. 305–310.
  26. Coutière, H. (1905) Les Alpheidae. In: Gardiner, J.S. (Ed.), The Fauna and Geography of the Maldive and Laccadive Archipelagoes. Vol. 2. University Press, Cambridge, pp. 852–921, pls. 70–87.
  27. Coutière, H. (1909) The American species of snapping shrimps of the genus Synalpheus. Proceedings of the United States National Museum, 36, 1–93. https://doi.org/10.5479/si.00963801.36-1659.1
  28. Crosnier, A. & Forest, J. (1966) Crustacés Décapodes: Alpheidae. In: Campagnes de la Calypso dans le Golfe de Guinée et aux Iles Principe, São Tomé et Annobon (1956), et Campagne aux Iles du Cap Vert (1959). Part 19: Résultats Scientifiques des Campagnes de la Calypso 7 (27). Annales de l’Institut Océanographique de Monaco, 44, pp. 199–314.
  29. Dana, J.D. (1852) Conspectus Crustaceorum quae in Orbis Terrarum circumnavigatione, Carolo Wilkes e Classe Reipublicae Foederatae Duce, lexit et descripsit. Proceedings of the Academy of Natural Sciences of Philadelphia, 1852, 10–28.
  30. Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772. https://doi.org/10.1093/molbev/mss075
  31. De Grave, S. & Fransen, C.H.J.M. (2011) Carideorum Catalogus: The recent species of the dendrobranchiate, stenopodidean, procarididean and caridean shrimps (Crustacea: Decapoda). Zoologische Mededelingen, 85, 195–588.
  32. Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973. https://doi.org/10.1093/molbev/mss075
  33. Dudoit, A.A., Iacchei, M., Coleman, R.R., Gaither, M.R., Browne, W.E., Bowen, B.W. & Toonen, R.J. (2018) The little shrimp that could: phylogeography of the circumtropical Stenopus hispidus (Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages. PeerJ, 6 (e4409), 1–12. https://doi.org/10.7717/peerj.4409
  34. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797. https://doi.org/10.1093/nar/gkh340
  35. Fabricius, J.C. (1798) Supplementum Entomologiae Systematicae. Proft et Storch, Hafniae, 572 + 53 pp. https://doi.org/10.5962/bhl.title.65803
  36. França, N.F.C., Alencar, C.E.R.D., Mantelatto, F.L. & Freire, F.A.M. (2020) Filling biogeographic gaps about the shrimp Farfantepenaeus isabelae Tavares & Gusmão, 2016 (Decapoda: Penaeidae) in South America. Zootaxa, 4718 (4), 497–508. https://doi.org/10.11646/zootaxa.4718.4.4
  37. Gibbes, L.R. (1850) On the carcinological collections of the United States, and an enumeration of species contained in them, with notes on the most remarkable, and descriptions of new species. Proceedings of the American Association for the Advancement of Science, 3, 165–201.
  38. Grajal, A.P. & Laughlin, R.G. (1984) Decapod crustaceans inhabiting live and dead colonies of three species of Acropora in the Roques Archipelago, Venezuela. Bijdragen tot de Dierkunde, 54, 220–230. https://doi.org/10.1163/26660644-05402008
  39. Guérin-Méneville, F.E. (1838) Crustacés, Arachnides et Insectes. In: Duperry, L.I., Voyage autour du monde, exécuté par Ordre du Roi, sur la Corvette de Sa Majesté, La Coquille, pendant les années 1822, 1823, 1824 et 1825, 1838, pp. 1–47, pls. 1–5.
  40. Guérin-Méneville, F.E. (1856) Animales articulados com piés articulados. In: de La Sagra, R., Historia fisica politica y natural de la isla de Cuba. Segunda parte. História Natural, Tomo VIII (Atlas de Zoología), pp. i–xxxii + 1–371, pls. 1–20.
  41. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
  42. Holthuis, L.B. (1980) Alpheus saxidomus new species, a rock boring snapping shrimp from the Pacific coast of Costa Rica, with notes on Alpheus simus Guérin-Méneville, 1856. Zoologische Mededelingen, 55, 47–58.
  43. Hultgren, K.M., Hurt, C. & Anker, A. (2014) Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae). Molecular Phylogenetics and Evolution, 77, 116–125. https://doi.org/10.1016/j.ympev.2014.03.008
  44. Hurt, C., Anker, A. & Knowlton, N. (2009) A multilocus test of simultaneous divergence across the Isthmus of Panama using snapping shrimp in the genus Alpheus. Evolution: International Journal of Organic Evolution, 63, 514–530. https://doi.org/10.1111/j.1558-5646.2008.00566.x
  45. Hurt, C., Silliman, K., Anker, A. & Knowlton, N. (2013) Ecological speciation in anemone‐associated snapping shrimps (Alpheus armatus species complex). Molecular Ecology, 22, 4532–4548. https://doi.org/10.1111/mec.12398
  46. Iturralde-Vinent, M.A. & MacPhee, R.D.E. (1999) Paleogeography of the Caribbean region: Implications for Cenozoic biogeography. Bulletin of the American Museum of Natural History, 238, 1–95.
  47. Jamaluddin, J.A.F., Mohammed, Akib, N.A., Ahmad, S.Z., Abdul Halim, S.A.A., Abdul Hamid, N.K. & Mohd Nor, S.A. (2019) DNA barcoding of shrimps from a mangrove biodiversity hotspot. Mitochondrial DNA, Part A, 30 (4), 618–625. https://doi.org/10.1080/24701394.2019.1597073
  48. Jesse, R., Pfenninger, M., Fratini, S., Scalici, M., Streit, B. & Schubart, C.D. (2009) Disjunct distribution of the Mediterranean freshwater crab Potamon fluviatile - natural expansion or human introduction? Biological Invasions, 11, 2209–2221. https://doi.org/10.1007/s10530-008-9377-0
  49. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111–120. https://doi.org/10.1007/BF01731581
  50. Knowlton, N. & Keller, B.D. (1983) A new, sibling species of snapping shrimp associated with the Caribbean Sea anemone Bartholomea annulata. Bulletin of Marine Science, 33, 353–362.
  51. Knowlton, N. & Keller, B.D. (1985) Two more sibling species of alpheid shrimps associated with the Caribbean Sea anemones Bartholomea annulata and Heteractis lucida. Bulletin of Marine Science, 37, 893–904.
  52. Knowlton, N. & Weigt, L.A. (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society of London B: Biological Sciences, 265, 2257–2263. https://doi.org/10.1098/rspb.1998.0568
  53. Knowlton, N., Weigt, L.A., Solorzano, L.A., Mills, D.K. & Bermingham, E. (1993) Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science, 260, 1629–1632. https://doi.org/10.1126/science.8503007
  54. Leray, M. & Knowlton, N. (2015) DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity. Proceedings of the National Academy of Sciences, 112, 2076–2081. https://doi.org/10.1073/pnas.1424997112
  55. Linnaeus, C. (1758) Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Reformata, Laurentius Salvius, Holmiae, 824 pp. https://doi.org/10.5962/bhl.title.542
  56. Mandai, S.S., Buranelli, R.C., Schubart, C.D. & Mantelatto, F.L. (2018) Phylogenetic and phylogeographic inferences based on two DNA markers reveal geographic structure of the orange claw hermit crab Calcinus tibicen (Anomura: Diogenidae) in the western Atlantic. Marine Biology Research, 14, 565–580. https://doi.org/10.1080/17451000.2018.1497184
  57. Mantelatto, F.L., Robles, R., Biagi, R. & Felder, D.L. (2006) Molecular analysis of the taxonomic and distributional status for the hermit crab genera Loxopagurus Forest, 1964, and Isocheles Stimpson, 1858 (Decapoda, Anomura, Diogenidae). Zoosystema, 28, 495–506.
  58. Mantelatto, F.L., Robles, R. & Felder, D.L. (2007) Molecular phylogeny of the western Atlantic species of the genus Portunus (Crustacea, Brachyura, Portunidae). Zoological Journal of the Linnean Society, 150, 211–220. https://doi.org/10.1111/j.1096-3642.2007.00298.x
  59. Mantelatto, F.L., Carvalho, F.L., Simões, S.M., Negri, M., Souza-Carvalho, E.A. & Terossi, M. (2016) New primers for amplification of Cytochrome c Oxidase subunit I barcode region designed for species of Decapoda (Crustacea). Nauplius, 24, e2016030. https://doi.org/10.1590/2358-2936e2016030
  60. Mantelatto, F.L., França, N.F.C., Cunha, A.M. & Almeida, A.O. (2023) Molecular data highlight cryptic diversity and reveal a new species in the Synalpheus brevicarpus (Herrick, 1891) complex (Decapoda: Caridea: Alpheidae) in the Western Atlantic. Journal of Crustacean Biology, 43 (4), 1–16. https://doi.org/10.1093/jcbiol/ruad076.
  61. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, 2010, 1–8. https://doi.org/10.1109/GCE.2010.5676129
  62. Morrone, J.J. & Lopretto, E.C. (1994) Distributional patterns of freshwater Decapoda (Crustacea: Malacostraca) in southern South America: a panbiogeographic approach. Journal of Biogeography, 21 (1), 97–109. https://doi.org/10.2307/2845607
  63. Moura, R.L., Amado-Filho, G.M., Moraes, F.C., Brasileiro, P.S., Salomon, P.S., Mahiques, M.M., Bastos, A.C., Almeida, M.G., Silva Jr., J.M., Araujo, B.F., Brito, F.P., Rangel, T.P., Oliveira, B.C.V., Bahia, R.G., Paranhos, R.P., Dias, R.J.S., Siegle, E., Figueiredo Jr., A.G., Pereira, R.C., Leal, C.V., Hajdu, E., Asp, N.E., Gregoracci, G.B., Neumann-Leitão, S., Yager, P.L., Francini-Filho, R.B., Fróes, A., Campeão, M., Silva, B.S., Moreira, A.P.B., Oliveira, L., Soares, A.C., Araujo, L., Oliveira, N.L., Teixeira, J.B., Valle, R.A.B., Thompson, C.C., Rezende, C.E. & Thompson, F.L. (2016) An extensive reef system at the Amazon River mouth. Science Advances, 2, 1–11. https://doi.org/10.1126/sciadv.1501252
  64. Peres, P.A. & Mantelatto, F.L. (2020) Salinity tolerance explains the contrasting phylogeographic patterns of two swimming crabs species along the Tropical Western Atlantic. Evolutionary Ecology, 34 (4), 589–609. https://doi.org/10.1007/s10682-020-10057-x
  65. Peres, P.A. & Mantelatto, F.L. (2023) Demographic changes and life-history strategies predict the genetic diversity in crabs. Journal of Evolutionary Biology, 36 (2), 432–443. https://doi.org/10.1111/jeb.14138
  66. Poore, G.C.B. & Ahyong, S.T. (2023) Marine decapod Crustacea: a guide to the families and genera of the world. CSIRO Publishing, Clayton South, xii + 916 pp. https://doi.org/10.1071/9781486311798
  67. Rafinesque, C.S. (1815) Analyse de la nature ou tableau de l’univers et des corps organisés. Aux deìpens de l'auteur, Palermo, 224 pp. https://doi.org/10.5962/bhl.title.106607
  68. Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer. Version 1.6. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 22 May 2024)
  69. Rathbun, M.J. (1901) Investigations of the Aquatic Resources and Fisheries of Porto Rico by the United States Fish Commission Steamer Fish Hawk in 1899. The Brachyura and Macrura of Porto Rico. Bulletin of the United States Fish Commission, 20, 1–127. [for 1900, preprint dated 1901, compiled in journal volume in 1902]
  70. Roberts, C.M., McClean, C.J., Veron, J.E.N., Hawkins, J.P., Allen, G.R., McAllister, D.E., Mittermeier, C.G., Schueler, F.W., Spalding, M., Wells, F., Vynne, C. & Werner, T.B. (2002) Marine biodiversity hotspots and conservation priorities for tropical reefs. Science, 295, 1280–1284. https://doi.org/10.1126/science.1067728
  71. Rodrigues, M.A., Dumont, L.F.C., Santos, C.R.M., D’Incao, F., Weiss, S. & Froufe, E. (2017) Two distinct mtDNA lineages of the blue crab reveal large-scale population structure in its native Atlantic distribution. Estuarine, Coastal and Shelf Science, 197, 45–53. https://doi.org/10.1016/j.ecss.2017.08.004
  72. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542. https://doi.org/10.1093/sysbio/sys029
  73. Rouzé, H., Leray, M., Magalon, H., Penin, L., Gélin, P., Knowlton, N. & Fauvelot, C. (2017) Erratum: Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral–guild ecology. Scientific reports, 7, 46818. https://doi.org/10.1038/srep46818
  74. Sales, J.B.L., Rodrigues-Filho, L.F.S., Ferreira, Y.S., Carneiro, J., Asp, N.E., Shaw, P.W., Haimovici, M., Markaida, U., Ready, J., Schneider, H. & Sampaio, I. (2017) Divergence of cryptic species of Doryteuthis plei Blainville, 1823 (Loliginidae, Cephalopoda) in the western Atlantic Ocean is associated with the formation of the Caribbean Sea. Molecular Phylogenetics and Evolution, 106, 44–54. https://doi.org/10.1016/j.ympev.2016.09.014
  75. Salgado-Barragán, J., Ayón-Parente, M. & Hendrickx, M.E. (2014) A new species of Leptalpheus Williams, 1965 and new records of L. mexicanus Ríos & Carvacho, 1983 and L. hendrickxi Anker, 2011 (Crustacea: Decapoda: Alpheidae) from the Pacific coast of Mexico. Zootaxa, 3835 (4), 573–582. https://doi.org/10.11646/zootaxa.3835.4.8
  76. Salgado-Barragán, J., Ayón-Parente, M. & Zamora-Tavares, P. (2017) New records and description of two new species of carideans shrimps from Bahía Santa María-La Reforma lagoon, Gulf of California, Mexico (Crustacea, Caridea, Alpheidae and Processidae). ZooKeys, 671, 131–153. https://doi.org/10.3897/zookeys.671.9081
  77. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual. 2ª Edition. Cold Spring Harbor Laboratory Press, New York, New York, 1626 pp.
  78. Santos, C.R.M. & D’Incao, F. (2004) Crustáceos no Cerrito Ariano Souza, Rio Grande, Rio Grande do Sul e distribuição de Callinectes sapidus (Brachyura: Portunidae). Iheringia, Série Zoologia, 94, 73–76. https://doi.org/10.1590/S0073-47212004000100013
  79. Santos, P.S., Soledade, G.O. & Almeida, A.O. (2012) Decapod crustaceans on dead coral from reef areas on the coast of Bahia, Brazil. Nauplius, 20, 145–169. https://doi.org/10.1590/S0104-64972012000200007
  80. Santos, P.S., Terossi, M., Mantelatto, F.L. & Almeida, A.O. (2019) Using integrative taxonomy to establish the status of Alpheus peasei (Armstrong, 1940) (Decapoda: Alpheidae) as a single species throughout its distribution. Zootaxa, 4629 (1), 51–68. https://doi.org/10.11646/zootaxa.4629.1.4
  81. Schmitt, W.L. (1924) Report on the Macrura, Anomura and Stomatopoda collected by the Barbados-Antigua Expedition from the University of Iowa in 1918. University of Iowa Studies in Natural History, 10, 65–99, pls. 1–5.
  82. Schubart, C.D. & Huber, M.G.J. (2006) Genetic comparisons of German populations of the stone crayfish, Austropotamobius torrentium (Crustacea: Astacidae). Bulletin Français de la Pêche et de la Pisciculture, 380, 1019–1028. https://doi.org/10.1051/kmae:2006008
  83. Silva, M.J., Creer, S., Santos, A., Costa, A.C., Cunha, M.R., Costa, F.O. & Carvalho, G.R. (2011) Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca). PLoS ONE, 6, e19449. https://doi.org/10.1371/journal.pone.0019449
  84. Soledade, G.O. & Almeida, A.O. (2013) Snapping shrimps of the genus Alpheus Fabricius, 1798 from Brazil (Caridea: Alpheidae): updated checklist and key for identification. Nauplius, 21, 89–122. https://doi.org/10.1590/S0104-64972013000100010
  85. Spalding, M.D., Fox, H.E., Allen, G.R., Davidson, N., Ferdaña, Z.A., Finlayson, M., Halpern, B.S., Jorge, M.A., Lombana, A., Lourie, S.A., Martin, K.D., Mc Manus, E., Molnar, J., Recchia, C.A. & Robertson, J. (2007) Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas. Bioscience, 57, 573–583. https://doi.org/10.1641/B570707
  86. Spence Bate, C. (1888) Report on the Crustacea Macrura collected by the Challenger during the years 1873–76. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873–76. Zoology, 24 (Part 52), i–xc + 1–942, pl. 1–150.
  87. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30, 2725–2729. https://doi.org/10.1093/molbev/mst197
  88. Tavares, M. (2011) Alien decapod crustaceans in the southwestern Atlantic Ocean. In: Galil, B.S., Clark, P.F. & Carlton, J.T. (Eds.), In the Wrong Place—Alien Marine Crustaceans: Distribution, Biology and Impacts. Invading Nature—Springer Series in Invasion Ecology, 6, pp. 251–268. https://doi.org/10.1007/978-94-007-0591-3_7
  89. Terossi, M., Almeida, A.O., Mantelatto, F.L. & Kochenborger, A.P.L. (2022) Shrimps of the genus Thor Kingsley, 1878 (Caridea, Thoridae): description of a new species using integrative data, remarks on Thor manningi Chace, 1972, and a world identification key. Nauplius, 30, e2022028. https://doi.org/10.1590/2358-2936e2022028
  90. Tourinho, J.L., Solé-Cava, A.M. & Lazoski, C. (2012) Cryptic species within the commercially most important lobster in the tropical Atlantic, the spiny lobster Panulirus argus. Marine Biology, 159 (9), 1897–1906. https://doi.org/10.1007/s00227-012-1977-7
  91. Werding, B. (1990) Alpheus schmitti Chace, 1972, a coral rock boring snapping-shrimp of the tropical western Atlantic (Decapoda, Caridea). Crustaceana, 58, 88–96. https://doi.org/10.1163/156854090X00804
  92. Williams, S.T, Knowlton, N., Weigt, L.A. & Jara, J.A. (2001) Evidence for three major clades within the snapping shrimp genus Alpheus inferred from nuclear and mitochondrial gene sequence data. Molecular Phylogenetics and Evolution, 20, 375–389. https://doi.org/10.1006/mpev.2001.0976