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Type: Article
Published: 2024-11-14
Page range: 101-126
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Koima, a new genus of nemacheilid loach from the Western Ghats, India (Cypriniformes: Nemacheilidae)

Faculty of Ocean Science and Technology; Kerala University of Fisheries and Ocean Studies (KUFOS); Kochi; India
Department of Life Sciences; School of Natural Sciences; Shiv Nadar Institution of Eminence; Delhi-NCR; India
Department of Fisheries Resource Management; Kerala University of Fisheries and Ocean Studies (KUFOS); Kochi; India
Pisces Mesonoemacheilus remadevii Nemacheilus monilis river-loach systematics taxonomy

Abstract

Koima, a new genus of nemacheilid loach, is described for Mesonoemacheilus remadevii Shaji 2002, and Nemacheilus monilis Hora 1921, both of which are endemic to the Western Ghats of southern peninsular India. Koima is distinguished from all other genera of family Nemacheilidae by its unique colour pattern comprising a yellowish-brown ground colour, single row of black spots on lateral line, all fins hyaline, and absence of a uniform banding pattern on dorsal side. Koima remadevii was initially identified as a species of Mesonoemacheilus Bănărescu & Nalbant 1982, from which it can be distinguished by the presence of a lower adipose crest, and an absence of a banding pattern on the dorsal side and on the caudal fin, while Koima monilis was initially identified as a species of Nemacheilus Bleeker 1863, from which it can be distinguished by the presence of a lower adipose crest, a narrow and deeply incised upper lip and having the fins hyaline. In the multi-gene phylogenetic analysis based on concatenated mitochondrial and nuclear gene sequences, Koima remadevii and K. monilis were recovered in a monophyletic group, sister to the endemic peninsular Indian nemacheilid, Schistura denisoni. Resolution of the identity of Koima remadevii and K. monilis contributes to our understanding of the phylogenetics of family Nemacheilidae, which is widely considered to be a polyphyletic group.

 

References

  1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403–410. https://doi.org/10.1016/S0022-2836(05)80360-2
  2. Anoop, V.K., Dahanukar, N., Ali, A. & Raghavan, R. (2017) Taxonomic status of the zodiac loaches, Mesonoemacheilus triangularis (Day 1865), M. tambaraparniensis (Menon 1987) and M. periyarensis (Kurup & Radhakrishnan 2005), endemic to the Western Ghats of India. Zootaxa, 4341 (1), 124–134. https://doi.org/10.11646/zootaxa.4341.1.11
  3. Anoop, V.K., Dahanukar, N., Philip, S., Thomas, L. & Raghavan, R. (2018) Phylogeny of the hillstream loach genus Mesonoemacheilus reveals widespread diversification through ancient drainage connections in the Western Ghats Biodiversity Hotspot. Molecular Phylogenetics and Evolution, 129, 77–84. https://doi.org/10.1016/j.ympev.2018.08.013
  4. Armbruster, J.W. (2012) Standardized measurements, landmarks, and meristic counts for cypriniform fishes. Zootaxa, 3586 (1), 8–16. https://doi.org/10.11646/zootaxa.3586.1.3
  5. Bănărescu, P. (1992) Zoogeography of Fresh Waters. Distribution and dispersal of freshwaters animals in North America and Eurasia. Aula-Verlag, Wiesbaden, 580 pp.
  6. Bănărescu, P. & Nalbant T.T. (1964) Süsswasserfische der Türkei. 2. Teil. Cobitidae. Mitteilungen aus dem Hamburgischen Zoologischen Museum und Institut, 61, 159– 201.
  7. Bleeker, P. (1863) Sur les genres de la famille des Cobitioïdes. Verslagen en Mededeelingen der Koninklijke Akademie van Wetenschappen, Afdeeling Natuurkunde, 15, 32–44.
  8. Bohlen, J., Dvořák, T., Šlechta, V. & Šlechtová, V. (2020) Resolving an unnoticed diversity within the Schistura robertsi species complex (Teleostei: Nemacheilidae) using molecules and morphology. Molecular Phylogenetics and Evolution, 151, 106894. https://doi.org/10.1016/j.ympev.2020.106894
  9. Bohlen, J. & V. Šlechtová, 2011a. A new genus and two new species of loaches (Teleostei: Nemacheilidae) from Myanmar. Ichthyological Exploration of Freshwaters, 22 (1), 1–10.
  10. Dvořák, T., Bohlen, J., Kottelat, M. & Šlechtová, V. (2023) Revision of the Schistura cincticauda species group (Teleostei, Nemacheilidae) using molecular and morphological markers. Scientific Reports, 13 (1), 16996. https://doi.org/10.1038/s41598-023-42852-1
  11. Du, L.N., Li, S.J., Xu, F., Luo, T., Luo, F.G., Yu, G.H. & Zhou, J. (2023) Clarification of Phylogenetic relationships among Chinese nemacheilids with tube‐shaped anterior nostrils, with a description of a new genus and two new species. Journal of Zoological Systematics and Evolutionary Research, 2023 (1), 3600085. https://doi.org/10.1155/2023/3600085
  12. Dvořák, T., Šlechtová, V. & Bohlen, J. (2022) Using species groups to approach the large and taxonomically unresolved freshwater fish family Nemacheilidae (Teleostei: Cypriniformes). Biology, 11 (2), 175. https://doi.org/10.3390/biology11020175
  13. Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797. https://doi.org/10.1093/nar/gkh340
  14. Freyhof, J., Geiger, M.F., Golzarianpour, K. & Patimar, R. (2016) Sasanidus, a new generic name for Noemacheilus kermanshahensis Bănărescu and Nalbant, with discussion of Ilamnemacheilus and Schistura (Teleostei; Nemacheilidae). Zootaxa, 4107 (1), 65–80. https://doi.org/10.11646/zootaxa.4107.1.3
  15. Freyhof, J. & Serov, D.V. (2001) Nemacheiline loaches from Central Vietnam with descriptions of a new genus and 14 new species (Cypriniformes: Balitoridae). Ichthyological Exploration of Freshwaters, 12, 133–191.
  16. Fricke, R., Eschmeyer, W.N. & van der Laan, R. (2024) Eschmeyer’s Catalog of Fishes: Genera, Species, References. Available from: http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp (accessed 8 October 2024)
  17. Gouy, M., Tannier, E., Comte, N. & Parsons, D.P. (2021) Seaview version 5: a multiplatform software for multiple sequence alignment, molecular phylogenetic analyses, and tree reconciliation. In: Katoh, K. (Eds.), Multiple Sequence Alignment. Methods in Molecular Biology, 2231, pp. 241–260. https://doi.org/10.1007/978-1-0716-1036-7_15
  18. Grant, S. (2007) A new subgenus of Acanthocobitis Peters, 1861 (Teleostei: Nemacheilidae). Ichthyofile, 2, 49–52 (unnumbered).
  19. Hoang, D.T., Chernomor, O., Von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35, 518–522. https://doi.org/10.1093/molbev/msx281
  20. Hora, S.L. (1921) Notes on fishes in the Indian Museum. II. On a new species of Nemachilus from the Nilgiri Hills. Records of the Indian Museum, Calcutta, 22, 19–21. https://doi.org/10.26515/rzsi/v22/i1/1921/163527
  21. Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587–589. https://doi.org/10.1038/nmeth.4285
  22. Keskar, A., Kumkar, P., Katwate, U., Ali, A., Raghavan, R. & Dahanukar, N. (2015) Redescription of Nemachilichthys rueppelli, a senior synonym of N. shimogensis (Teleostei: Nemacheilidae). Zootaxa, 4059 (3), 555–568. https://doi.org/10.11646/zootaxa.4059.3.7
  23. Keskar, A., Raghavan, R., Kumkar, P., Padhye, A. & Dahanukar, N. (2017) Assessing the sustainability of subsistence fisheries of small indigenous fish species: Fishing mortality and exploitation of hill stream loaches in India. Aquatic Living Resources, 30, 13. https://doi.org/10.1051/alr/2016036
  24. Keskar, A., Raghavan, R., Paingankar, M. S., Kumkar, P., Katwate, U., Jadhav, S., Padhye A. & Dahanukar, N. (2018) Molecular phylogeny unveils hidden diversity of hillstream loaches (Cypriniformes: Cobitoidea) in the northern Western Ghats of India. Meta Gene, 17, 237–248. https://doi.org/10.1016/j.mgene.2018.07.002
  25. Kottelat, M. (1990) Indochinese nemacheilines. A revision of nemacheiline loaches (Pisces: Cypriniformes) of Thailand, Burma, Laos, Cambodia and southern Viet Nam. Verlag Dr. Friedrich Pfeil, München, 262 pp.
  26. Kottelat, M. (2011) Claea, a new replacement name for Oreias Sauvage, 1874 (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 21 (4), 384.
  27. Kottelat, M. (2012a) Conspectus cobitidum: an inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei). The Raffles Bulletin of Zoology, 26 (Supplement), 1–199.
  28. Kottelat, M. (2012b) Draconectes narinosus, a new genus and species of cave fish from an island of Halong Bay, Vietnam (Teleostei: Nemacheilidae). Revue Suisse de Zoologie, 119 (3), 341–349. https://doi.org/10.5962/bhl.part.150197
  29. Kottelat, M. (2017) A new genus and three new species of nemacheilid loaches from northern Irrawaddy drainage, Myanmar (Teleostei: Cypriniformes). Raffles Bulletin of Zoology, 65, 80–99. https://doi.org/10.5281/zenodo.4504495
  30. Kottelat, M. (2018) Mustura celata, a new genus and species of loaches from northern Myanmar, and an overview of Physoschistura and related taxa (Teleostei: Nemacheilidae). Ichthyological Exploitation of Freshwaters, 1080, 1–26. https://doi.org/10.23788/IEF-1080
  31. Kottelat, M. (2019) Rhyacoschistura larreci, a new genus and species of loach from Laos and redescription of R. suber (Teleostei: Nemacheilidae). Zootaxa, 4612 (2), 151–170. https://doi.org/10.11646/zootaxa.4612.2.1
  32. Kottelat, M. & Freyhof, J. (2007) Handbook of European freshwater fishes. Kottelat, Cornol & Freyhof, Berlin, 646p.
  33. Kottelat, M. & Grego, J. (2020). Kayahschistura lokalayensis, a new genus and species of cave fish from Myanmar (Teleostei: Nemacheilidae). Raffles Bulletin of Zoology, 35, 179–185.
  34. Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874. https://doi.org/10.1093/molbev/msw054
  35. Kumkar, P., Pise, M., Gorule, P.A., Verma, C.R. & Kalous, L. (2021) Two new species of the hillstream loach genus Indoreonectes from the northern Western Ghats of India (Teleostei: Nemacheilidae). Vertebrate Zoology, 71, 517–533. https://doi.org/10.3897/vz.71.e62814
  36. Luo, T., Yang, Q., Wu, L., Wang, Y.L., Zhou, J.J., Deng, H.Q., Xiao, N., Zhou, J. (2023) Phylogenetic relationships of Nemacheilidae cavefish (Heminoemacheilus, Oreonectes, Yunnanilus, Paranemachilus, and Troglonectes) revealed by analysis of mitochondrial genome and seven nuclear genes. Zoological Research, 44 (4), 693–697. https://doi.org/10.24272/j.issn.2095-8137.2022.266
  37. McClelland, J. (1838) Observations on six new species of Cyprinidae, with an outline of a new classification of the family. Journal of the Asiatic Society of Bengal, 7, 941–948, pls. 55–56.
  38. Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., Von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution, 37, 1530–1534. https://doi.org/10.1093/molbev/msaa015
  39. Nei, M. & Kumar, S. (2000) Molecular Evolution and Phylogenetics. Oxford University Press, Oxford, 333 pp. https://doi.org/10.1093/oso/9780195135848.001.0001
  40. Ponniah, A.G. & Gopalakrishnan, A. (2000) Endemic fish diversity of Western Ghats. National Bureau of Fish Genetic Resources, Lucknow, 347 pp.
  41. Prokofiev, A.M. (2001) Dzihunia, a new genus of nemacheiline loaches from the Aral Sea basin (Pisces: Cypriniformes: Balitoridae). Zoosystematica Rossica, 10, 209–213.
  42. Prokofiev, A.M. (2009) Problems of the classification and phylogeny of Nemacheiline loaches of the group lacking the preethmoid I (Cypriniformes: Balitoridae: Nemacheilinae). Journal of Ichthyology, 49, 874–898. https://doi.org/ 10.1134/S0032945209100051
  43. Raghavan, R., Dahanukar, N., Tlusty, M.F., Rhyne, A.L., Kumar, K.K., Molur, S. & Rosser, A. (2013) Uncovering an obscure trade: threatened freshwater fishes and the aquarium pet markets. Biological Conservation, 164, 158–169. https://doi.org/10.1016/j.biocon.2013.04.019
  44. Rambaut, A. (2016) FigTree. Version 1.4.3. [Software]. Available from: http://tree.bio.ed.ac.uk/software/figtree (accessed 17 April 2019)
  45. Schwarz, G. (1978) Estimating the dimension of a model. The Annals of Statistics, 6, 461–464. https://doi.org/10.1214/aos/1176344136
  46. Segherloo, I. H., Ghaedrahmati, N. & Freyhof, J. (2016) Eidinemacheilus, a new generic name for Noemacheilus smithi Greenwood (Teleostei; Nemacheilidae). Zootaxa, 4147(4), 466–476. https://doi.org/10.11646/zootaxa.4147.4.7
  47. Sgouros, K., Page, L.M., Orlofske, S.A. & Jadin, R.C. (2019) A revised molecular phylogeny reveals polyphyly in Schistura (Teleostei: Cypriniformes: Nemacheilidae). Zootaxa, 4559 (2), 349–362. https://doi.org/10.11646/zootaxa.4559.2.8
  48. Shaji, C.P., Easa, P.S. & Gopalakrishnan, A. (2000) Freshwater fish diversity of Western Ghats. In: Ponniah, A.G. & Gopalakrishnan, A. (Eds.), Endemic fish diversity of Western Ghats. National Bureau of Fish Genetic Resources, Lucknow, pp. 33–55.
  49. Shaji, C.P. (2002) Mesonoemacheilus remadevii (Pisces: Balitoridae. Nemacheilinae) from Silent Valley National Park, Kerala. Indian Journal of Fisheries, 49 (2), 217–221. [https://epubs.icar.org.in/index.php/IJF/article/view/8337]
  50. Sidharthan, A., Raghavan, R., Anoop, V.K., Philip S. & Dahanukar, N. (2020) Riddle on the riffle: Miocene diversification and phylogeography of endemic mountain loaches (Cypriniformes: Balitoridae) in the Western Ghats Biodiversity Hotspot. Journal of Biogeography, 47 (12), 2741–2754. https://doi.org/10.1111/jbi.13972
  51. Singer, R.A. & Page, L.M. (2015) Revision of the zipper loaches, Acanthocobitis and Paracanthocobitis (Teleostei: Nemacheilidae), with descriptions of five new species. Copeia, 103 (2), 378–401. https://doi.org/10.1643/CI-13-128
  52. Singer, R.A., Pfeiffer, J.M. & Page, L.M. (2017) A revision of the Paracanthocobitis zonalternans (Cypriniformes: Nemacheilidae) species complex with descriptions of three new species. Zootaxa, 4324 (1), 85–107. https://doi.org/10.11646/zootaxa.4324.1.5
  53. Singh, A., Sen, N., Bănărescu, P. & Nalbant, T.T. (1982) New noemacheiline loaches from India (Pisces: Cobitidae). Travaux du Muséum d’Histoire Naturelle “Grigore Antipa”, 23, 201–212.
  54. Šlechtová, V., Musilova, Z., Tan, H.H., Kottelat, M. & Bohlen, J. (2021) One northward, one southward: Contrasting biogeographical history in two benthic freshwater fish genera across Southeast Asia (Teleostei: Cobitoidea: Nemacheilus, Pangio). Molecular Phylogenetics and Evolution, 161, 107139. https://doi.org/10.1016/j.ympev.2021.107139
  55. Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38, 3022–3027. https://doi.org/10.1093/molbev/msab120
  56. Tapkir, S.D., Kumkar, P., Gosavi, S.M., Kharat, S.S., Patoka, J. & Kalous, L. (2021) Far from home: tracking the global ornamental fish trade in endangered zebra loach, Botia striata, from freshwater ecoregion and biodiversity hotspot in India. Journal for Nature Conservation, 61, 126007. https://doi.org/10.1016/j.jnc.2021.126007
  57. You, L., Zhao, M., Cui, C., Zhao, H. & Yang, B. (2009) Effect of degree of hydrolysis on the antioxidant activity of loach (Misgurnus anguillicaudatus) protein hydrolysates. Innovative Food Science and Emerging Technologies, 10, 235–240. https://doi.org/10.1016/j.ifset.2008.08.007
  58. Zhang, C.-G. & Zhao, Y.-H. (2016) Species Diversity and Distribution of Inland Fishes in China. Science Press, Beijing, 284 pp.