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Type: Article
Published: 2024-12-17
Page range: 57-74
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Morphological redescription and population genetics of Pagastia (Pagastia) orientalis (Tshernovskij, 1949) (Diptera: Chironomidae: Diamesinae)

Federal Scientific Center of the East Asia Terrestrial Biodiversity; Far East Branch of the Russian Academy of Sciences; 100 let Vladivostoku 159; 690022 Vladivostok; Russia
A.V. Zhirmunsky National Scientific Center of Marine Biology; Far Eastern Branch of the Russian Academy of Sciences; Palchevskogo 17; Vladivostok 690041; Russia
Far Eastern Federal University; Institute of the World Ocean; 10 Ajax Bay; Russky Island; 690922 Vladivostok; Russia
Federal Scientific Center of the East Asia Terrestrial Biodiversity; Far East Branch of the Russian Academy of Sciences; 100 let Vladivostoku 159; 690022 Vladivostok; Russia
Diptera Chironomidae Diamesinae Pagastia orientalis population genetics mitochondrial DNA Eastern Palaearctic

Abstract

Pagastia (P.) orientalis (Tshernovskij, 1949) is redescribed by morphology of adult male from East Palaearctic with remarks on some variability of morphological features and with consideration of population genetics of species, namely population structure and variability from 24 localities belonging to 10 groups.  Population genetic analysis of P. (P.) orientalis revealed multiple haplotypes (209 haplotypes for 213 samples) and a high level of haplotype diversity—0.999±0.001. The results of neutrality tests were significant (P<0.01) and showed negative values, which may indicate population expansion in the past. Clustering of haplotypes into haplogroups was shown, the differentiation between which is significant (P<0.001) while the gene flow was almost virtually absent, which may affect at the level of genetic diversity of a single population.

 

References

  1. Allegrucci, G., Carchini, G., Todisco, V. & Sbordoni, S. (2012) Evolutionary geographic relationships among orthocladine chironomid midges from maritime Antarctic and subAntarctic islands. Biological Journal of the Linnean Society, 106, 258–274. https://doi.org/10.1111/j.1095-8312.2012.01864.x
  2. Ashe, P. & O’Connor, J.P. (2009) A World Catalogue of Chironomidae (Diptera). Part 1. Buchonommyiinae, Chilenomeiinae, Podonominae, Aphroteniinae, Tanypodinae, Usambaromyiinae, Diamesinae, Prodiamesinae and Telmatogetoninae. Irish Biogeographical Society & National Museum of Ireland, Dublin, 445 pp.
  3. Avise, J.C. (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, 447 pp. https://doi.org/10.2307/j.ctv1nzfgj7
  4. Bursali, F. & Simsek, F.M. (2024) Population Genetics of Culex tritaeniorhynchus (Diptera: Culicidae) in Türkiye. Acta Parasitologica, 69(2), 1157–1171. https://doi.org/10.1007/s11686-024-00844-9
  5. Davies, K.T.J., Cotton, J.A., Kirwan, J.D., Teeling, E.C. & Rossiter, S.J. (2012) Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence. Heredity, 108, 480–489. https://doi.org/10.1038/hdy.2011.119
  6. Edgington, H., Pavinato, V.A.C., Spacht, D., Gantz, J.D., Convey, P., Lee R.E., Denlinger, D.L. & Michel, A. (2023) Genetic history, structure and gene flow among populations of Belgica antarctica, the only free-living insect in the western Antarctic Peninsula. Polar Science, 36, 100945. https://doi.org/10.1016/j.polar.2023.100945
  7. Excoffier, L. & Lischer, H.E.L. (2010) Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x
  8. Excoffier, L., Smouse, P. & Quattro, J. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics, 131, 479–491. https://doi.org/10.1093/genetics/131.2.479
  9. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783–791. https://doi.org/10.2307/2408678
  10. Ferreri, M., Qu, W. & Han, B. (2011) Phylogenetic networks: A tool to display character conflict and demographic history. African Journal of Biotechnology, 10 (60), 12799–12803. https://doi.org/10.5897/AJB11.010
  11. Hansen, D.C. & Cook, E.F. (1976) The systematics and morphology of the Nearctic species of Diamesa Meigen, 1835 (Diptera: Chironomidae). Memoirs of the American Entomological Society, 30, 1–203.
  12. Hudson, R.R., Slatkin, M. & Maddison, W.P. (1992) Estimation of levels of gene flow from DNA sequence data. Genetics, 132 (2), 583–589. https://doi.org/10.1093/genetics/132.2.583
  13. Joshi, J, Salar, R.K., Banerjee, P., Upasna, S., Tantia, M.S. & Vijh, R.K. (2013) Genetic variation and phylogenetic relationships of Indian buffaloes of uttar pradesh. Asian-Australasian Journal of Animal Sciences, 26 (9), 1229–1236. https://doi.org/10.5713/ajas.2012.12669.
  14. Korotky, A.M., Korobov, V.V. & Skrylnik, G.P. (2011) Anomalous natural processes and their influence on state of geosystems of south of Russian Far East. Dal’nauka, Vladivostok, 265 pp. [in Russian]
  15. Kravtsova, L.S., Bukin, Y.S., Peretolchina, T.E. & Shcherbakov, D.Yu. (2015) Genetic differentiation of populations of Baikal endemic Sergentia baicalensis Tshern. (Diptera, Chironomidae). Russian Journal of Genetics, 51, 707–710. https://doi.org/10.1134/S1022795415060083
  16. Krosch, M.N., Baker, A.M., Mckie, B.G., Mather, P.B. & Cranston, P.S. (2009) Deeply divergent mitochondrial lineages reveal patterns of local endemism in chironomids of the Australian Wet Tropics. Austral Ecology: A Journal of Ecology in the Southern Hemisphere, 34, 317–328. https://doi.org/10.1111/j.1442-9993.2009.01932.x
  17. Levanidov, V.Ya. & Levanidova, I.M. (1962) Spawning and rearing reservoirs of the Teplovsky Fish Hatchery and their biological productivity. Izvestia TINRO, 48, 3–66. [in Russian]
  18. Linevich, A.A. (1959) New species of midges (Diptera, Tendipedidae) of the Baikal Lake. Entomology Review, 38(1), 238–242. [in Russian]
  19. Linevich, A.A. & Makarchenko, E.A. (1989) New or little known species of subfamily Diamesinae (Diptera, Chironomidae) from Baikal Territory. In: Levanidov, V.Ya. (Ed.), Systematics and ecology of river organisms. DVNC AN SSSR Press, Vladivostok, pp. 20–37. [in Russian]
  20. Linevich, A.A., Samburova, V.E. & Aleksandrov, V.N. (1991) On the investigation of the metamorphosis of Baikal Lake chironomids. In: Linevich, A.A. & Afanasieva, E.A. (Eds.), Morphology and evolution of invertebrates. Nauka, Novosibirsk, pp. 211–266. [in Russian]
  21. Linevich, A.A., Makarchenko, E.A. & Aleksandrov, V.N. (2002) Chironomids of Baikal and Pribaikalye: Podonominae, Tanypodinae, Diamesinae, Prodiamesinae, Orthocladiinae. Index of species and forms. Nauka, Novosibirsk, 136 pp. [in Russian]
  22. Lipina, N.N. (1949) The tendipedid larvae of Teletskoe Lake, its tributaries, and of the Biya River. Proceedings of Zoological Institute of Akademy of Sciences USSR, 7 (4), 193–212. [in Russian]
  23. Lundberg, A.S. & McDevitt, H.O. (1992) Evolution of major histocompatibility complex class II allelic diversity: direct descent in mice and humans. Proceedings of the National Academy of Sciences of the United States of America, 89, 6545–6549. https://doi.org/10.1073/pnas.89.14.6545
  24. Makarchenko, E.A. (1977) Some Diamesinae and Orthocladiinae (Diptera, Chironomidae) from the Kedrovaya Pad nature reserve. In: Levanidov, V.Ya. (Ed.), Freshwater fauna of Kedrovaya Pad nature reserve. DVNC AN SSSR Press, Vladivostok, pp. 109–125. [in Russian]
  25. Makarchenko, E.A. (1981) Taxonomy and distribution of some chironomids of subfamily Diamesinae (Diptera, Chironomidae) from the Soviet Far East. In: Levanidov, V.Ya. (Ed.), Invertebrate animals in ecosystems of salmon rivers of the Far East. DVNC AN SSSR Press, Vladivostok, pp. 89–113. [in Russian]
  26. Makarchenko, E.A. (1985) Chironomids of the Soviet Far East. Subfamilies Podonominae, Diamesinae and Prodiamesinae (Diptera, Chironomidae). DVNC AN SSSR Press, Vladivostok, 208 pp. [in Russian]
  27. Makarchenko, E.A. (1996) A Checklist of the subfamily Diamesinae (Diptera, Chironomidae) of the Far East. Makunagi, 19, 1–16.
  28. Makarchenko, E.A. (2006) 3. Subfamily Diamesinae. In: Lelej, A. (Ed.), Key to the insects of Russian Far East. Vol. 6. Diptera and Siphonaptera. Pt 4. Dal’nauka, Vladivostok, pp. 253–276, 468–480, 607–621. [in Russian]
  29. Makarchenko, E.A. (2019) Review of the genus Pagastia Oliver (Diptera: Chironomidae: Diamesinae) from North America, with description of P. (P.) subletteorum sp. nov. Zootaxa, 4664 (1), 115–128. https://doi.org/10.11646/zootaxa.4664.1.5
  30. Makarchenko, E.A. (2024) Description of Pagastia (Pagastia) kadi sp. n. (Diptera: Chironomidae: Diamesinae) from the Amur River basin. Far Eastern Entomologist, 506, 1–6. https://doi.org/10.25221/fee.506.1
  31. Makarchenko, E.A. & Hansen, D.C. (2020) Pagastia (P.) donoliveri sp. nov. – a new Nearctic alpine stream chironomid species (Diptera: Chironomidae: Diamesinae) from the Beartooth Mountains, Wyoming, U.S.A. Zootaxa, 4755 (1), 171–176. https://doi.org/10.11646/zootaxa.4755.1.9
  32. Makarchenko, E.A. & Makarchenko, M.A. (1999) Chironomidae. In: Tsalolikhin, S.J. (Ed.), Key to freshwater invertebrates of Russia. Vol. 4. Diptera, Zoological Institute of the Russian Academy of Sciences. Saint Petersburg, pp. 210–295, 670–857. [in Russian]
  33. Makarchenko, E.A. & Makarchenko, M.A. (2000) Revision of Pagastia Oliver, 1959 (Diptera, Chironomidae) of the Holarctic region. In: Hoffrichter, O. (Ed.), Late 20th Century Research on Chironomidae: an Anthology from the 13th International Symposium on Chironomidae. Shaker Verlag, Achen, pp. 171–176.
  34. Makarchenko, E.A. & Wang, X. (2017) Pagastia tianmumontana sp. n. – a new species of chironomids (Diptera: Chironomidae: Diamesinae) from South China. Far Eastern Entomologist, 336, 13­–15.
  35. Makarchenko, E.A., Semenchenko, A.A. & Palatov, D.M. (2021) New species and findings of Pagastia Oliver (Diptera: Chironomidae: Diamesinae) from Central Asia, with DNA barcoding of known species of the genus. Zootaxa, 4951 (3), 559–570. https://doi.org/10.11646/zootaxa.4951.3.8
  36. Morgan-Richards, M., Bulgarella, M., Sivyer, L., Dowle, E.J., Hale, M., McKean, N.E. & Trewick, S.A. (2017) Explaining large mitochondrial sequence differences within a population sample. Royal Society Open Science, 4, 170730. https://doi.org/10.1098/rsos.170730
  37. Namayandeh, A., Hudson, P.L., Bogan, D.L. & Hudson, J.P. (2024) Chironomidae (Diptera: Insecta) of Alaska, USA, with descriptions of new species and a checklist. Zootaxa, 5511 (1), 1–95. https://doi.org/10.11646/zootaxa.5511.1.1
  38. Oliver, D.R. (1959) Some Diamesini (Chironomidae) from the Nearctic and Palaearctic. Entomologisk Tidskrift, 80, 48–64.
  39. Oliver, D.R. (1989) The adult males of Diamesinae (Diptera: Chironomidae) of the Holarctic region – Keys and diagnoses. Entomologica Scandinavica, Supplement 34, 129–154.
  40. Pankratova, V.Ya. (1970) Larvae and pupae of the midges of the subfamily Orthocladiinae (Diptera, Chironomidae = Tendipedidae) of the USSR fauna. In: Bykhovskyi, V.E. (Ed.), Key to the USSR fauna, published by Zoological Institute of the USSR Academy of Sciences.Vol. 102. Nauka, Leningrad, pp. 1–344. [in Russian]
  41. Pedrosa, J.A.M., Cocchiararo, B., Verdelhos, T., Soares, A.M.V.M., Pestana, J.L.T. & Nowak, C. (2017) Population genetic structure and hybridization patterns in the cryptic sister species Chironomus riparius and Chironomus piger across differentially polluted freshwater systems. Ecotoxicology and Environmental Safety, 141, 280–289. https://doi.org/10.1016/j.ecoenv.2017.03.004
  42. Petit, R., Aguinagalde, I., de Beaulieu, J.L., Bittkau, C., Brewer, S., Cheddadi, R., Ennos, R., Fineschi, S., Grivet, D., Lascoux, M., Mohanty, A., Müller-Starck, G., Demesure-Musch, B., Palmé, A., Martín, J.P., Rendell, S. & Vendramin, G.G. (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300 (5625), 1563–1565. https://doi.org/10.1126/science.1083264.
  43. Pillans, B., Chappell, J. & Naish, T.R. (1998) A review of the Milankovitch climatic beat: template for Plio-Pleistocene sea-level changes and sequence stratigraphy. Sedimentary Geology, 122, 5–21. https://doi.org/10.1016/S0037-0738(98)00095-5
  44. Roback, S.S. & Coffman, W.P. (1987) Results of the Nepal Alpine Zone research project, Chironomidae (Diptera). Proceedings of the Academy of Natural Science of Philadelphia, 139, 87–158.
  45. Rozas, J., Ferrer-Mata, A., Sánchez-DelBarrio, J.C., Guirao-Rico S., Librado, P., Ramos-Onsins, S.E. & Sánchez-Gracia (2017) DnaSP 6: DNA sequence polymorphism analysis of large datasets. Molecular Biology and Evolution, 34 (12), 3299–3302. https://doi.org/10.1093/molbe v/msx248
  46. Sæther, O.A. (1980) Glossary of chironomid morphology terminology (Diptera, Chironomidae). Entomologica scandinavica, Supplement 14, 1–51.
  47. Sanal Demirci, S.N., Kilic, V., Mutun, S. & Kilic, A.Y. (2021) Population genetics and phylogeography of Tabanus bromius (Diptera: Tabanidae). Parasites Vectors, 14, 453. https://doi.org/10.1186/s13071-021-04970-5
  48. Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595. https://doi.org/10.1093/genetics/123.3.585
  49. Tshernovskij, A.A. (1949) Key to larvae of the midges of the family Tendipedidae. In: Pavlovskyi, E.N. & Stackelberg, A.A. (Eds.), Key to the USSR fauna, published by Zoological Institute of the USSR Academy of Sciences. Vol. 31. Nauka, Leningrad-Moscow, pp. 1–185. [in Russian]
  50. Vahdati, R. & Wagner, A. (2016) Parallel or convergent evolution in human population genomic data revealed by genotype networks. BMC evolutionary biology, 16, 154. https://doi.org/10.1186/s12862-016-0722-0
  51. Webb, J.M., Cole, M.B. & Simmons, T. (2022) DNA barcoding takes bioassessment further: new distribution records for aquatic macroinvertebrates from Alaskan National Parks. Proceedings of the Entomological Society of Washington, 124, 131–149. https://doi.org/10.4289/0013-8797.124.1.131