Skip to main content Skip to main navigation menu Skip to site footer
Type: Article
Published: 2025-12-04
Page range: 511-532
Abstract views: 82
PDF downloaded: 6

A new species of Cnemaspis (Squamata: Gekkonidae) from Temburong District, Brunei Darussalam

Natural History Museum and Institute Chiba; 955-2 Aoba-cho; Chuo-ku; Chiba 260-8682; Japan
Faculty of Science; Toho University; 2-2-1 Miyama; Funabashi; Chiba 274-8510; Japan
Graduate School of Global Environmental Studies; Kyoto University; Yoshida Honmachi; Sakyo-ku; Kyoto 606-8501; Japan; The Geopark Research Centre; Institute for Environment and Development (LESTARI); University Kebangsaan Malaysia; UKM Bangi; Selangor 43600; Malaysia; Department of Biology; Faculty of Science; Chulalongkorn University; Bangkok 10330; Thailand
Faculty of Science; Universiti Brunei Darussalam; Jalan Tungku Link; Bandar Seri Begawan; Gadong BE1410; Brunei Darussalam
Reptilia Borneo Bukit Patoi kerangas Lun Bawang sandstone saxicolous

Abstract

A new species of sandstone-dwelling rock gecko of the genus Cnemaspis is described from Bukit Patoi, Temburong District, Brunei Darussalam. This is the first country record for the genus, expanding the known distribution of Bornean Cnemaspis and advancing our understanding of its species diversity. Molecular phylogenetic analyses using mitochondrial and nuclear DNA sequences confirm that the new species, Cnemaspis gituen sp. nov., represents a distinct evolutionary lineage, inferred to be the sister taxon of C. lagang from northeastern Sarawak. Cnemaspis gituen sp. nov. can be morphologically distinguished from all Bornean congeners by a unique combination of characters, most notably the presence of patches of aggregated tubercles on the lower flank associated with brilliant yellow spots in males. It further differs from C. lagang by having prominent trunk tuberculation (versus indistinct) and a suite of colouration differences in males (e.g., dark brown head versus grey). Unlike members of the nigridia species group, it is differentiated by its distinctive flank spots (versus faint vertical lines), fewer paravertebral tubercles (16–20 versus 23–38), and a continuous median row of slightly enlarged, keeled subcaudals (versus smooth median subcaudals). The new species is also distinguished by its small maximum SVL (50.8 mm) and 7–10 precloacal pores (in total) and unique caudal colouration in males.

 

References

  1. Anderson, M.J. (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology, 26 (1), 32–46. https://doi.org/10.1111/j.1442-9993.2001.01070.pp.x
  2. Amarasinghe, A.A.T., Harvey, M.B., Riyanto, A. & Smith, E.N. (2015) A new species of Cnemaspis (Reptilia: Gekkonidae) from Sumatra, Indonesia. Herpetologica, 71 (2), 160–167. https://doi.org/10.1655/HERPETOLOGICA-D-14-00034
  3. Ampai, N., Rujirawan, A., Yodthong, S., Termprayoon, K., Stuart, B.L., Wood, P.L. Jr. & Aowphol, A. (2022) Hidden diversity of rock geckos within the Cnemaspis siamensis species group (Gekkonidae, Squamata): genetic and morphological data from southern Thailand reveal two new insular species and verify the phylogenetic affinities of C. chanardi and C. kamolnorranathi. ZooKeys, 1125, 115–158. https://doi.org/10.3897/zookeys.1125.94060
  4. Ashton, P.S. (1964) Ecological Studies in the Mixed Dipterocarp Forests of Brunei State. Oxford Forestry Memoirs, No. 25. Clarendon Press, Oxford, 75 pp.
  5. Bouckaert, R., Vaughan, T.G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., Heled, J., Jones, G., Kühnert, D., De Maio, N., Matschiner, M., Mendes, F.K., Müller, N.F., Ogilvie, H.A., du Plessis, L., Popinga, A., Rambaut, A., Rasmussen, D., Siveroni, I. & Drummond, A.J. (2019) BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15 (4), e1006650. https://doi.org/10.1371/journal.pcbi.1006650
  6. Das, I. & Bauer, A.M. (1998) Systematics and biogeography of Bornean geckos of the genus Cnemaspis Strauch, 1887 (Sauria: Gekkonidae), with the description of a new species. The Raffles Bulletin of Zoology, 46 (1), 11–28.
  7. Davis, H.R., Das, I., Leaché, A.D., Karin, B.R., Brennan, I.G., Jackman, T.R., Nashriq, I., Chan, K.O. & Bauer, A.M. (2021) Genetically diverse yet morphologically conserved: hidden diversity revealed among Bornean geckos (Gekkonidae: Cyrtodactylus). Journal of Zoological Systematics and Evolutionary Research, 59, 1113–1135. https://doi.org/10.1111/jzs.12470
  8. Doughty, P., Palmer, R., Sistrom, M.J., Bauer, A.M. & Donnellan, S.C. (2012) Two new species of Gehyra (Squamata: Gekkonidae) geckos from the north-west Kimberley region of Western Australia. Records of the Western Australian Museum, 27 (2), 117–134. https://doi.org/10.18195/issn.0312-3162.27(2).2012.117-134
  9. Duméril, A.M.C. & Bibron, G. (1836) Erpetologie Générale ou Histoire Naturelle Complete des Reptiles. Vol. 3. Librairie Encyclopédique de Roret, Paris, 528 pp. https://doi.org/10.5962/bhl.title.45973
  10. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32 (5), 1792–1797. https://doi.org/10.1093/nar/gkh340
  11. Gamble, T., Greenbaum, E., Jackman, T.R., Russell, A.P. & Bauer, A.M. (2012) Repeated origin and loss of adhesive toepads in geckos. PLoS ONE, 7 (6), e39429. https://doi.org/10.1371/journal.pone.0039429
  12. Gray, J.E. (1845) Catalogue of the Specimens of Lizards in the British Museum. British Museum, London, 289 pp.
  13. Grismer, L.L. & Chan, K.O. (2009) A new species of karst dwelling Cnemaspis Strauch 1887 (Squamata: Gekkonidae) from Sarawak, Borneo. Zootaxa, 2246 (1), 21–31. https://doi.org/10.11646/zootaxa.2246.1.2
  14. Grismer, L.L., Grismer, J.L., Wood, P.L. Jr. & Chan, K.O. (2008) The distribution, taxonomy, and redescription of the geckos Cnemaspis affinis (Stoliczka 1887) and C. flavolineata (Nicholls 1949) with descriptions of a new montane species and two new lowland, karst-dwelling species from Peninsular Malaysia. Zootaxa, 1931 (1), 1–24. https://doi.org/10.11646/zootaxa.1931.1.1
  15. Grismer, L.L., Sumontha, M., Cota, M., Grismer, J.L., Wood, P.L. Jr., Pauwels, O.S. & Kunya, K. (2010) A revision and redescription of the rock gecko Cnemaspis siamensis (Taylor 1925) (Squamata: Gekkonidae) from Peninsular Thailand with descriptions of seven new species. Zootaxa, 2576 (1), 1–55. https://doi.org/10.11646/zootaxa.2576.1.1
  16. Grismer, L.L., Wood, P.L. Jr., Anuar, S., Riyanto, A., Ahmad, N., Muin, M.A., Sumontha, M., Grismer, J.L., Chan, K.O., Quah, E.S.H. & Pauwels, O.S.A. (2014) Systematics and natural history of Southeast Asian rock geckos (genus Cnemaspis Strauch, 1887) with descriptions of eight new species from Malaysia, Thailand, and Indonesia. Zootaxa, 3880 (1), 1–147. https://doi.org/10.11646/zootaxa.3880.1.1
  17. Groth, J.G. & Barrowclough, G.F. (1999) Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Molecular Phylogenetics and Evolution, 12 (2), 115–123. https://doi.org/10.1006/mpev.1998.0603
  18. Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59 (3), 307–321. https://doi.org/10.1093/sysbio/syq010
  19. Hutchison, C.S. (2005) Geology of North-West Borneo: Sarawak, Brunei and Sabah. Elsevier, Amsterdam, 421 pp.
  20. iNaturalist Community. (2025) Observations of the genus Cnemaspis from Borneo. Available from: https://www.inaturalist.org/observations?nelat=7.0372045&nelng=119.2693619&subview=map&swlat=-4.178474899999999&swlng=108.8406735&taxon_id=33405 (accessed 1 May 2025)
  21. Iskandar, D.T., McGuire, J.A. & Amaraginghe, A.A.T. (2017) Description of five new day geckos of Cnemaspis kandiana group (Sauria: Gekkonidae) from Sumatra and Mentawai Archipelago, Indonesia. Journal of Herpetology, 51 (1), 142–153. https://doi.org/10.1670/15-047
  22. Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587–589. https://doi.org/10.1038/nmeth.4285
  23. Karunarathna, S., Poyarkov, N.A., de Silva, A., Madawala, M., Botejue, M., Gorin, V.A., Surasinghe, T., Gabadage, D., Ukuwela, K.D.B. & Bauer, A.M. (2019) Integrative taxonomy reveals six new species of day geckos of the genus Cnemaspis Strauch, 1887 (Reptilia: Squamata: Gekkonidae) from geographically-isolated hill forests in Sri Lanka. Vertebrate Zoology, 69 (3), 247–298. https://doi.org/10.26049/VZ69-3-2019-02
  24. Khandekar, A., Thackeray, T. & Agarwal, I. (2024) Five new species of the Cnemaspis beddomei clade (Squamata: Gekkonidae) from high elevation, evergreen forests of the Southern Western Ghats, India. Zootaxa, 5469 (1), 1–70. https://doi.org/10.11646/zootaxa.5469.1.1
  25. Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35 (6), 1547–1549. https://doi.org/10.1093/molbev/msy096
  26. Kurita, T., Nishikawa, K., Matsui, M. & Hikida, T. (2017) A new species of rock gecko genus Cnemaspis (Squamata: Gekkonidae) from western Sarawak. Zootaxa, 4256 (6), 525–538. https://doi.org/10.11646/zootaxa.4258.6.2
  27. Kurita, T., Kojima, Y., Hossman, M.Y. & Nishikawa, K. (2020) Phylogenetic position of a bizarre lizard Harpesaurus implies the co-evolution between arboreality, locomotion, and reproductive mode in Draconinae (Squamata: Agamidae). Systematics and Biodiversity, 18 (7), 675–687. https://doi.org/10.1080/14772000.2020.1795741
  28. Kurita, T., Nishikawa, K., Hossman, M.Y., Mizuno, T., Sato, H. & Gumal, M. (2024) Description of a new sandstone-dwelling species of genus Cnemaspis (Sauria: Gekkonidae) from Gunung Santubong National Park, southwestern Sarawak, Malaysia. Zootaxa, 5468 (2), 361–378. https://doi.org/10.11646/zootaxa.5468.2.7
  29. Leichti, P. (1960) Geological Map of Sarawak, Brunei and North Borneo, 1:500,000. Brunei Shell Petroleum Company Ltd. Australian National University, Department of Human Geography Map Collection. Available from: https://hdl.handle.net/1885/146360 (accessed 1 June 2025)
  30. Maddison, W.P. & Maddison, D.R. (2025) Mesquite: a modular system for evolutionary analysis. Version 4.0 beta. Available from: http://www.mesquiteproject.org (accessed 1 June 2025)
  31. Malonza, K.P. & Bauer, M.A. (2022) Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya. Zootaxa, 5141 (2), 101–139. https://doi.org/10.11646/zootaxa.5141.2.1
  32. Martinez Arbizu, P. (2020) pairwiseAdonis: pairwise multilevel comparison using adonis. R package version 0.4. Available from: https://github.com/pmartinezarbizu/pairwiseAdonis (accessed 1 June 2025)
  33. Maulidi, A., Jakaria, M., Fitriyana, N. & Rizki, M. (2019) Herpetofauna diversity at Munggu Village, Landak Regency, West Kalimantan Province, Indonesia. Biogenesis Jurnal Ilmiah Biologi, 7 (2), 116–123. https://doi.org/10.24252/bio.v7i2.10072
  34. Mocquard, F. (1890) Recherches sur la faune herpétologique des îles de Bornèo et de Palawan. Nouvelles archives du Muséum d’histoire naturelle, Paris, 3 (2), 115–168.
  35. Morley, C.K., Back, S., van Rensbergen, P., Crevello, P. & Lambiase, J.J. (2003) Characteristics of repeated, detached, Miocene–Pliocene tectonic inversion events, in a large delta province on an active margin, Brunei Darussalam, Borneo. Journal of Structural Geology, 25 (7), 1147–1169. https://doi.org/10.1016/S0191-8141(02)00130-X
  36. Müller, L. (1907) Über einen neuen Gecko aus Kamerun und eine neue colubrine Schlange aus Centralchina. Zoologischer Anzeiger, 31, 824–830.
  37. Nashriq, I. & Das, I. (2021) Underestimated diversity of Cnemaspis Strauch, 1887 (Sauria: Gekkonidae) on karst landscapes in Sarawak, East Malaysia, Borneo. Journal of Threatened Taxa, 13 (7), 18792–18799. https://doi.org/10.11609/jott.2021.13.7.18679-18958
  38. Nashriq, I., Davis, H.R., Bauer, A.M. & Das, I. (2022) Three new species of Cnemaspis (Sauria: Gekkonidae) from Sarawak, East Malaysia, Borneo. Zootaxa, 5120 (1), 1–29. https://doi.org/10.11646/zootaxa.5120.1.1
  39. Nguyen, L.-T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution, 32 (1), 268–274. https://doi.org/10.1093/molbev/msu300
  40. Oksanen, J., Blanchet, F.G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., Minchin, P.R., O’Hara, R.B., Simpson, G.L., Solymos, P., Steens, M.H.H., Szoecs, E. & Wagner, H. (2020) vegan: community ecology package. R package. Version 2.5-7. Available from: https://CRAN.R-project.org/package=vegan (accessed 10 September 2023)
  41. Paradis, E., Claude, J. & Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20 (2), 289–290. https://doi.org/10.1093/bioinformatics/btg412
  42. Pyron, R.A., Burbrink, F.T. & Wiens, J.J. (2013) A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evolutionary Biology, 13, 93. https://doi.org/10.1186/1471-2148-13-93
  43. R Core Team. (2022) R: a language and environment for statistical computing. Available from: https://www.R-project.org/ (accessed 10 September 2023)
  44. Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67 (5), 901–904. https://doi.org/10.1093/sysbio/syy032
  45. Rice, P., Longden, I. & Bleasby, A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends in Genetics, 16 (6), 276–277. https://doi.org/10.1016/s0168-9525(00)02024-2
  46. Riyanto, A., Munir, M., Martamenggala, A.I.S., Fitriana, Y.S. & Hamidy, A. (2019) Hiding in plain sight on Gunung Muria: a new species and first record of rock gecko (Cnemaspis Strauch, 1887; Squamata, Gekkonidae) from Java, Indonesia. Zootaxa, 4608 (1), 155–173. https://doi.org/10.11646/zootaxa.4608.1.9
  47. Sahari, S., Shah, A.A., Aaisyah, D., Batmanathan, N. & Shahbuddin, A. (2023) Active detachment faulting controls folding and faulting in western Borneo, SE Asia. Journal of Asian Earth Sciences: X, 9, 100133. https://doi.org/10.1016/j.jaesx.2022.100133
  48. Sandal, S.T. (1996) The Geology and Hydrocarbon Resources of Negara Brunei Darussalam. Brunei Shell Petroleum Co. and Brunei Museum, Seria, 243 pp.
  49. Schlegel, H. (1851) Descriptions de plusieurs espèces nouvelles du genre Lophyrus. Bijdragen tot de Dierkunde, 3 (1), 4–6. https://doi.org/10.1163/26660644-00301002
  50. Smith, M.A. (1925) IV. Contributions to the herpetology of Borneo. Sarawak Museum Journal, 8, 15–34.
  51. Strauch, A.A. (1887) Bemerkungen über die Geckoniden-Sammlung im zoologischen Museum der kaiserlichen Akademie der Wissenschaften zu St. Petersburg. Mémoires de L’Académie Impériale des Sciences de Saint-Pétersbourg, Series 7, 35 (2), 1–72.
  52. Tadano, T., Nagai, H., Ishida, H., Oda, F., Naito, S., Minakawa, K. & Iwamoto, H. (2016) Initial validation of the 30 m-mesh Global Digital Surface Model generalized by ALOS PRISM. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, ISPRS, XLI-B4, 157–162.
  53. Tuie, M. (1995) Masyarakat Lun Bawang Sarawak: Suatu Pengenalan. Dewan Bahasa dan Pustaka, Kementerian Pendidikan Malaysia, Kuching, 166 pp. [in Bahasa Melayu]
  54. Uetz, P., Freed, P., Aguilar, R., Reyes, F., Kudera, J. & Hošek, J. (2025) The Reptile Database. Available from: http://www.reptile-database.org (accessed 1 June 2025)
  55. van Berkel, T.B.T., Rogers, L.D., Kilburn, H.J., Munir, M., Mortiboys, D.M. & Goodchild, R. (2012) A preliminary biodiversity survey of a lowland rainforest in Bukit Batikap Protection Forest, Central Kalimantan, Indonesian Borneo. Murung Raya Expedition 2010–2011 Scientific Report. Heart of Borneo Project. A https://doi.org/10.13140/RG.2.2.25180.28802
  56. Wood, P.L. Jr., Grismer, L.L., Aowphol, A., Aguilar, C.A., Cota, M., Grismer, M.S., Murdoch, M.L. & Sites, J.W. Jr. (2017) Three new karst-dwelling Cnemaspis Strauch, 1887 (Squamata; Gekkonidae) from Peninsular Thailand and the phylogenetic placement of C. punctatonuchalis and C. vandeventeri. PeerJ, 5, e2884. https://doi.org/10.7717/peerj.2884

How to Cite

Kurita, T., Kojima, Y., Nishikawa, K. & Grafe, T.U. (2025) A new species of Cnemaspis (Squamata: Gekkonidae) from Temburong District, Brunei Darussalam. Zootaxa, 5725 (4), 511–532. https://doi.org/10.11646/zootaxa.5725.4.4